Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0232 ATGAGACATTTGCATGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATGATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGAGATTTCATTAACTGTACTCTGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAACAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACATGCAAGTATAAACTGGATATTAAAGTCATACACCAACATGGGAGTGGAAGGTTTGTTTTCTGGGATTGTCAATATGCTGACATCATTGGCGTATCGGCATCTGACTTAAGAGATCAGATGGTTGCAGAAGGTGAAGATGATCCCAAGGCATTCCCTTTAATTCTGGATGAACTGCTTGCAAGAACAATGGCTCTAAGGGTCAAAGTGCAACCCTCATACAACCAATCTTCTGTTATCAGACTTTCTGAGGATCCAAATTTAATCAAGAATATACTTGATCAAATTGTCATATTTCAGCCAACAAATTCTGATGATATGAAAGCAAAGTCTGATATTAATGATTCCTTTCAGTTAGACTCTGTGAGTGCATCACATATTTTCTTTTACAAAATTTACACTGCAAAGTCTGTGTCTATTACTGCTGATCATGATCCAGACCTTTTACAAGTTTTAACTCCAGCCAAACGATTATCGGCTGACATTGACGTGGACCTCATACAAAGTCCACTGTATAATTCTACTCAGTTGTCATCTTCAAAGGTGGCAAAGCATATCAACATTGACTGA 1407 0.3682 MRHLHGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNDLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTLWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTTMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKYKLDIKVIHQHGSGRFVFWDCQYADIIGVSASDLRDQMVAEGEDDPKAFPLILDELLARTMALRVKVQPSYNQSSVIRLSEDPNLIKNILDQIVIFQPTNSDDMKAKSDINDSFQLDSVSASHIFFYKIYTAKSVSITADHDPDLLQVLTPAKRLSADIDVDLIQSPLYNSTQLSSSKVAKHINID 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0232 468 Pfam Domain of unknown function DUF223 5 90 IPR003871 -
Lal4g0232 468 Gene3D - 4 64 IPR012340 -
Lal4g0232 468 SUPERFAMILY Nucleic acid-binding proteins 228 354 IPR012340 -
Lal4g0232 468 Gene3D - 68 205 IPR012340 -
Lal4g0232 468 CDD RPA1_DBD_A_like 5 61 - -
Lal4g0232 468 Gene3D - 213 375 IPR012340 -
Lal4g0232 468 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 17 303 - -
Lal4g0232 468 PANTHER REPLICATION FACTOR A 1, RFA1 17 303 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal4g0232 468 CDD RPA1_DBD_B_like 113 197 - -
Lal4g0232 468 SUPERFAMILY Nucleic acid-binding proteins 75 202 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0232 Lal-Chr4 1463904 1467090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0232 5 362 Core DNA Replication Machinery Family AT5G08020 21.762 8.18e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0232 - - lang:109343677 596.275