Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0230 ATGTCTCAAACCAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAAGGAAAAGTCTCCTCGGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCCGAGGTTGCTGCATCTTATATCGAGACACAATTAATTAAGGCAAGGGAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCCACAACCCCAGCAGTCACAGCATCAACAGCAACATATGCAGATGCAACAGCTCTTGATGCAGAGGCATGCACAGCAGCAGCAGCAGCAACAGCAACAACAGCAACAGCAGCAGCAGCAGCAACAGCAACAACATCAACAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAAATCAGAGATAGATCTCATCTCTTAAATGGTACTACAAATGGGTTAGTTGGAAACTCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGATAAAATCACCCCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTTGTGAGAACATGGGTCAACTGTTGGACCCGAGTCATGCCTCAATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTTCTGGTGGGATGTCTCCTCAAGTCCAAGCTCATAGTCAGCAATTGCCGGGGTCTACTCCGGATATAAAGAGTGAGATTAATCCTGTTATAAATCCCAGAGCTGCAGGTCCCGAAGGATCATTGCTAGCAATTCCTGGTATTTTCCATACTGTGGTTGATTTGTTCTATTTGAGAATTGGATCAAATCAAGGTAGCAACAATTTGACTCTGAAGGGGTGGCCTCTCACAGGTTTGGAGCAACTACGCTCTGGTCTACTCCAGCAACAGAAACCTTTCATTCAGGCTCCCCAGCCTTTTCATCAACTTCCAATGTTGACACCACAACAACAGCTTATGTTTGCCCAACAAAATTTAGCATCACCATCTGCTAGTGATGAAAGTAGAAGACTCAGAATGCTCTTGAATAATAGGAGTATGAGCCTAAATAAGGATGGTCTTTCAAACTCTGTTGGTGATGTAGTATCAAATATCGGATCACCTCTTCAAGGTGGTGCCCCTTCTTTTGGGCGCGGAGATACAGATATGCTAATGAAGTTGAAATTAGCTCAGTTACAGCATCAACAACAGTCAAACACCAATCAACAGCAGCAGCAGCAGCAACTTCAACAGCCTGCTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGCTGGAAGTGGCACTGTGGATGGTAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCGGGCCCTGCCAATAGTACAGGAACAGCAAATACAGCTGGCCCATCACCAGGTTCCGCACCCTCAACTCCATCAACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTGGTTCTTCAAAGCCTTTAACAATGTTTGGTACTGATGGCACTGGAACTCTTACATCACCTTCAAACCAGCTGTGGGATTATAAGGATATTGAATTGCAGGCTGACGTGGATCGCTTTGTGGACGATGGATCTCTTGATGAAAATGTCGAATCCTTTTTATCTCATGATGAAACAGACCCCAGAGATACTGTTGGCCGCTGCTTCACATTTTCTGAATTAAATTCTGTACGTGCAAGCACGAGCAAAGTAGTTTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGCACACAGATTCTCTGAAGCAAAAAGCTACTCTTGAAGAACATTCGTCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCACGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCGATTCGGAACTTCACTGGACATTCAGCAGCTGTTATGTCACTAGATTTTCACCCAATTAAAGATGACCTTATCTGCTCCTGTGATGGTGATGGTGAAATACGATATTGGAGTATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACTATCCAGATGAGATTCCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTGTCTATACTTGATGTTGAGACACAAGCATGCCAATATTCATTAAAGGGACACACAAAGCCGATACATTCTGTCTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAAGACTGTGTCAGGGTTTGGACTCTTGGAACAGGTAGTGAAGGAGAATGTGTACATGAGCTCAGCTGCAATGGTAGCAAGTTTCACTCATGTGTTTTCCACCCAACATACCCTTCATTGCTGGTCATTGGTTGTTACCAGTCATTGGAGCTGTGGAACATGAGTGAGAACAAGACAATGACTATTTCTGCTCATGAAGGTCTTATTGCTGCCTTGTCTGTTTCAACTGTAAATGGTCTGGTTTCTTCTGCCAGTCATGATAAGTTTATCAAGCTCTGGAAATGA 2724 0.4479 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQPQPQQSQHQQQHMQMQQLLMQRHAQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQIRDRSHLLNGTTNGLVGNSGTANALATKMYEERIKSPLQRDSLDDAAMKQRFCENMGQLLDPSHASILKSAAASGQPSGQVLHGASGGMSPQVQAHSQQLPGSTPDIKSEINPVINPRAAGPEGSLLAIPGIFHTVVDLFYLRIGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPFHQLPMLTPQQQLMFAQQNLASPSASDESRRLRMLLNNRSMSLNKDGLSNSVGDVVSNIGSPLQGGAPSFGRGDTDMLMKLKLAQLQHQQQSNTNQQQQQQQLQQPALSNQQSQSSNHNMHQQDKVGGGAGSGTVDGSMSNSFRGNDQVSKNQMGRKRKQPVSSSGPANSTGTANTAGPSPGSAPSTPSTHTPGDVISMPALPHSGGSSKPLTMFGTDGTGTLTSPSNQLWDYKDIELQADVDRFVDDGSLDENVESFLSHDETDPRDTVGRCFTFSELNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSIRNFTGHSAAVMSLDFHPIKDDLICSCDGDGEIRYWSINNGSCARVSKGGTIQMRFQPRLGRYLAAAAENVVSILDVETQACQYSLKGHTKPIHSVCWDPSGELLASVSEDCVRVWTLGTGSEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTISAHEGLIAALSVSTVNGLVSSASHDKFIKLWK 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0230 907 Gene3D - 756 907 IPR015943 GO:0005515
Lal4g0230 907 MobiDBLite consensus disorder prediction 427 464 - -
Lal4g0230 907 Pfam WD domain, G-beta repeat 785 820 IPR001680 GO:0005515
Lal4g0230 907 Pfam WD domain, G-beta repeat 662 697 IPR001680 GO:0005515
Lal4g0230 907 Pfam WD domain, G-beta repeat 622 654 IPR001680 GO:0005515
Lal4g0230 907 Pfam WD domain, G-beta repeat 705 741 IPR001680 GO:0005515
Lal4g0230 907 MobiDBLite consensus disorder prediction 90 120 - -
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 708 746 - -
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 700 IPR001680 GO:0005515
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 875 907 - -
Lal4g0230 907 CDD WD40 623 907 - -
Lal4g0230 907 ProSitePatterns Trp-Asp (WD) repeats signature. 684 698 IPR019775 -
Lal4g0230 907 SMART WD40_4 616 655 IPR001680 GO:0005515
Lal4g0230 907 SMART WD40_4 827 866 IPR001680 GO:0005515
Lal4g0230 907 SMART WD40_4 783 821 IPR001680 GO:0005515
Lal4g0230 907 SMART WD40_4 868 907 IPR001680 GO:0005515
Lal4g0230 907 SMART WD40_4 658 697 IPR001680 GO:0005515
Lal4g0230 907 SMART WD40_4 701 741 IPR001680 GO:0005515
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 750 IPR001680 GO:0005515
Lal4g0230 907 Gene3D - 605 755 IPR015943 GO:0005515
Lal4g0230 907 SMART Lish 8 40 IPR006594 GO:0005515
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 664 IPR001680 GO:0005515
Lal4g0230 907 Coils Coil 422 442 - -
Lal4g0230 907 MobiDBLite consensus disorder prediction 228 260 - -
Lal4g0230 907 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 907 IPR044716 GO:0003714
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 875 907 IPR001680 GO:0005515
Lal4g0230 907 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lal4g0230 907 Coils Coil 113 156 - -
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 790 830 IPR001680 GO:0005515
Lal4g0230 907 MobiDBLite consensus disorder prediction 475 535 - -
Lal4g0230 907 Pfam LisH 10 36 IPR006594 GO:0005515
Lal4g0230 907 MobiDBLite consensus disorder prediction 427 556 - -
Lal4g0230 907 SUPERFAMILY WD40 repeat-like 616 907 IPR036322 GO:0005515
Lal4g0230 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 700 - -
Lal4g0230 907 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0230 Lal-Chr4 1445768 1453798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0230 702 906 Miscellaneous Gene Families AT5G08390 24.286 1.77e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lal4g0230 WD40 1.1e-06 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0230 - - gmx:100816263 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0247 17 1535433 1544371 Lal4g0230 4 1445768 1453798 LSH
Lal21g0355 21 2415742 2425163 Lal4g0230 4 1445768 1453798 LSH