Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0222 ATGTCGCAGATAATGGGAGAAACAAAGGACGAAGGATATGAGGAGGAGCTTCTCGATTACGAAGAGGAAGAAGAAAAAGCCCCCGACTCCGTTGGAGCTAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTTTAAAGCCAGAGCTTCTTCGTGCTATTGTCGACTCGGTGCAACACGAATGCATACCTCAAGCAATTCTTGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCATCTTTGCAGCAGATTGATCCTGTCCCAGGCCAAGTTTCTGCACTTGTTATGTGTCACACAAGAGAGTTAGCATACCAGATATGCCATGAGTTTGAGAGATTTAGCACCTACTTGCCTGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAACATTAAAGTTCACAAGGATCTGTTGAGAAATGAATGCCCTCATATTGTTGTTGGTACTCCTGGAAGAATACTAGCATTGGCTAGGGATAAAGACCTTTCTTTGAAGAATGTTAGGCATTTTATTTTAGATGAATGTGATAAGATGCTAGAATCACTAGACATGAGGAAAGATGTGCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGACCAGTCTGCAAAAAATTTATGCAAGATAAGTTTATTAGCCCTTGCCTGTTAGGTATGGGGTTTCACAACATTGGGTGTTCTTTTTCTTTGGAGATGGGAGGGTTGTTAGTGTATTCCGGGTTTGTTGCTGCCAGTGTTCTTAAGTGCACATGTCTGTCAGTAGCACCTGCTTGGTGTGACTTGAAAAAGTTCCTCAAGCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTAAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTGGTGGAGTGCAACTTCCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGACATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTCAATATTGTCATAAACTATGACATGCCTGATTCTGCAGACACATATTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTACTGATGTTGATGTCCTCAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACATCTACCTACAGTATTGCCATCGTAGATGTTATTATTTCTGGGAAAGCTTTAATAACTAGTTGGATGGAGGAGAGTAGAATGGCTGCTACTGTTTTCATGAAACATCATGTTTATGACCAACTAGTAGTAGCCATATTGATATTCTGCACTGCTTCATCCAGCTTATGGGTAGGACATGGATTAAGTACTTTTGATGTGCTTCATTATGGTGCCAAAGGGAATGGTCTAATTGATGATTCTGAAGCCTTTCTGAAAGCATGGAATGCTGCATGTGTAGTAACTGGAAACACTATTCCAACAATTCTTGTACCAGAGGGACACACATTCAAGTTACAACCTACGAATTTTAAGGGTCCTTGCAAGTCCAAGAACATTAACTTTCAGTTAATGGGAACTATACTAGCTCCTCAGAAAAGTGAATGGAAAGGTGATGTAAAGAAATGGATTGTTTTCTCCATGGTTGATGGTCTAAGTTTATATGGATCAGGATTAATAGATGGTCAAGGTTTTGAATGGTGGAACAACACAAAGAAGCCTATAAAAAAGCTTAATTACATTTTAAAATTCCAACATTTAATAATTTCCAATTTGCAGGCTCTAAGGTTTAATTCATGCAATGATCTTAATATGAATGGAGTGAACCATATAAATGGCCCCGGAGGACACATAAATGTGCATGAATGCAAAAATGTTACTATATCAGGTCTTAATATAACTTCACCAGGAAATAGTCCTAATACAGATGGAATTGACATCTCATACTCAAGCCAAGTTGAAATATCTAATTCTTTCATTGGTGTAGGTGACGATTGCATTGCTATTAAAGGTGGTTGTTCACATATTAAAATTCACCACATTGCTTGTGGACCAGGTCATGGCATAAGTATTAGGAGTCTGAAACAAAATGATAAAGTGGAAGATGTACACGTATGGAACTGCAGCATCAATGGTGCTACAAATGGAGCTAGAATCAAGACATGGCCATTGGAAGGAAATGGGTATGCTAGAAAAATCTCATTTGAACATATCACATTTATAAACACAACTTATCCTATAATAATTGACCAGAATTATGGTATCAAAGTAAAAGATGAAGGAGGGATAAATGTGAGTGATATCACATACTATGATCTTAAAGGAACTTGTGCTAAGGATATAGCAATTTCATTGAATTGTGGAACAAAGTATTGTTCTAACATCACCATGAACCAAATCAATATAATCTCTGCTGATCCTGCAAAAGAGGCTACTACTTTGTGTAATAATGTCCAAGGAAATTTTAGGAATGTTATACCTAAAGTAACTTGTTCATGA 2739 0.3888 MSQIMGETKDEGYEEELLDYEEEEEKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVMCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDKFISPCLLGMGFHNIGCSFSLEMGGLLVYSGFVAASVLKCTCLSVAPAWCDLKKFLKPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYSIAIVDVIISGKALITSWMEESRMAATVFMKHHVYDQLVVAILIFCTASSSLWVGHGLSTFDVLHYGAKGNGLIDDSEAFLKAWNAACVVTGNTIPTILVPEGHTFKLQPTNFKGPCKSKNINFQLMGTILAPQKSEWKGDVKKWIVFSMVDGLSLYGSGLIDGQGFEWWNNTKKPIKKLNYILKFQHLIISNLQALRFNSCNDLNMNGVNHINGPGGHINVHECKNVTISGLNITSPGNSPNTDGIDISYSSQVEISNSFIGVGDDCIAIKGGCSHIKIHHIACGPGHGISIRSLKQNDKVEDVHVWNCSINGATNGARIKTWPLEGNGYARKISFEHITFINTTYPIIIDQNYGIKVKDEGGINVSDITYYDLKGTCAKDIAISLNCGTKYCSNITMNQINIISADPAKEATTLCNNVQGNFRNVIPKVTCS 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0222 912 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 32 248 - -
Lal4g0222 912 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 296 476 - -
Lal4g0222 912 Pfam DEAD/DEAH box helicase 68 233 IPR011545 GO:0003676|GO:0005524
Lal4g0222 912 Gene3D - 533 910 IPR012334 -
Lal4g0222 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 451 IPR027417 -
Lal4g0222 912 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 32 248 - -
Lal4g0222 912 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 296 476 - -
Lal4g0222 912 Pfam Helicase conserved C-terminal domain 330 437 IPR001650 -
Lal4g0222 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 247 IPR014001 -
Lal4g0222 912 SUPERFAMILY Pectin lyase-like 532 911 IPR011050 -
Lal4g0222 912 SMART helicmild6 356 437 IPR001650 -
Lal4g0222 912 Pfam Glycosyl hydrolases family 28 572 899 IPR000743 GO:0004650|GO:0005975
Lal4g0222 912 CDD SF2_C_DEAD 317 446 - -
Lal4g0222 912 MobiDBLite consensus disorder prediction 12 26 - -
Lal4g0222 912 Gene3D - 313 481 IPR027417 -
Lal4g0222 912 MobiDBLite consensus disorder prediction 1 31 - -
Lal4g0222 912 CDD DEADc_DDX39 49 243 - -
Lal4g0222 912 Gene3D - 38 246 IPR027417 -
Lal4g0222 912 SMART pbh1 810 839 IPR006626 -
Lal4g0222 912 SMART pbh1 730 751 IPR006626 -
Lal4g0222 912 SMART pbh1 703 729 IPR006626 -
Lal4g0222 912 SMART pbh1 780 801 IPR006626 -
Lal4g0222 912 SMART pbh1 753 773 IPR006626 -
Lal4g0222 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 477 IPR001650 -
Lal4g0222 912 SMART ultradead3 62 256 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0222 Lal-Chr4 1393951 1403063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0222 5 478 Eukaryotic Initiation Factors Gene Family AT5G11200 80.287 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0222 K12812 - han:110891513 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0222 4 1393951 1403063 Lal4g0222 4 1393951 1403063 ECH
Lal21g0340 21 2275973 2281460 Lal4g0222 4 1393951 1403063 ECH
Lal17g0234 17 1447458 1452513 Lal4g0222 4 1393951 1403063 LSH
Lal21g0340 21 2275973 2281460 Lal4g0222 4 1393951 1403063 LSH