Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal4g0222 | ATGTCGCAGATAATGGGAGAAACAAAGGACGAAGGATATGAGGAGGAGCTTCTCGATTACGAAGAGGAAGAAGAAAAAGCCCCCGACTCCGTTGGAGCTAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTTTAAAGCCAGAGCTTCTTCGTGCTATTGTCGACTCGGTGCAACACGAATGCATACCTCAAGCAATTCTTGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCATCTTTGCAGCAGATTGATCCTGTCCCAGGCCAAGTTTCTGCACTTGTTATGTGTCACACAAGAGAGTTAGCATACCAGATATGCCATGAGTTTGAGAGATTTAGCACCTACTTGCCTGATCTGAAGGTTGCTGTCTTTTATGGTGGGGTCAACATTAAAGTTCACAAGGATCTGTTGAGAAATGAATGCCCTCATATTGTTGTTGGTACTCCTGGAAGAATACTAGCATTGGCTAGGGATAAAGACCTTTCTTTGAAGAATGTTAGGCATTTTATTTTAGATGAATGTGATAAGATGCTAGAATCACTAGACATGAGGAAAGATGTGCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGACCAGTCTGCAAAAAATTTATGCAAGATAAGTTTATTAGCCCTTGCCTGTTAGGTATGGGGTTTCACAACATTGGGTGTTCTTTTTCTTTGGAGATGGGAGGGTTGTTAGTGTATTCCGGGTTTGTTGCTGCCAGTGTTCTTAAGTGCACATGTCTGTCAGTAGCACCTGCTTGGTGTGACTTGAAAAAGTTCCTCAAGCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCCCTAGACTTCAACCAAGTTGTTATCTTTGTAAAAAGTGTCAGTAGAGCAGCTGAGCTGGACAAACTACTGGTGGAGTGCAACTTCCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGACATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTCAATATTGTCATAAACTATGACATGCCTGATTCTGCAGACACATATTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGTTCTACTGATGTTGATGTCCTCAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACATCTACCTACAGTATTGCCATCGTAGATGTTATTATTTCTGGGAAAGCTTTAATAACTAGTTGGATGGAGGAGAGTAGAATGGCTGCTACTGTTTTCATGAAACATCATGTTTATGACCAACTAGTAGTAGCCATATTGATATTCTGCACTGCTTCATCCAGCTTATGGGTAGGACATGGATTAAGTACTTTTGATGTGCTTCATTATGGTGCCAAAGGGAATGGTCTAATTGATGATTCTGAAGCCTTTCTGAAAGCATGGAATGCTGCATGTGTAGTAACTGGAAACACTATTCCAACAATTCTTGTACCAGAGGGACACACATTCAAGTTACAACCTACGAATTTTAAGGGTCCTTGCAAGTCCAAGAACATTAACTTTCAGTTAATGGGAACTATACTAGCTCCTCAGAAAAGTGAATGGAAAGGTGATGTAAAGAAATGGATTGTTTTCTCCATGGTTGATGGTCTAAGTTTATATGGATCAGGATTAATAGATGGTCAAGGTTTTGAATGGTGGAACAACACAAAGAAGCCTATAAAAAAGCTTAATTACATTTTAAAATTCCAACATTTAATAATTTCCAATTTGCAGGCTCTAAGGTTTAATTCATGCAATGATCTTAATATGAATGGAGTGAACCATATAAATGGCCCCGGAGGACACATAAATGTGCATGAATGCAAAAATGTTACTATATCAGGTCTTAATATAACTTCACCAGGAAATAGTCCTAATACAGATGGAATTGACATCTCATACTCAAGCCAAGTTGAAATATCTAATTCTTTCATTGGTGTAGGTGACGATTGCATTGCTATTAAAGGTGGTTGTTCACATATTAAAATTCACCACATTGCTTGTGGACCAGGTCATGGCATAAGTATTAGGAGTCTGAAACAAAATGATAAAGTGGAAGATGTACACGTATGGAACTGCAGCATCAATGGTGCTACAAATGGAGCTAGAATCAAGACATGGCCATTGGAAGGAAATGGGTATGCTAGAAAAATCTCATTTGAACATATCACATTTATAAACACAACTTATCCTATAATAATTGACCAGAATTATGGTATCAAAGTAAAAGATGAAGGAGGGATAAATGTGAGTGATATCACATACTATGATCTTAAAGGAACTTGTGCTAAGGATATAGCAATTTCATTGAATTGTGGAACAAAGTATTGTTCTAACATCACCATGAACCAAATCAATATAATCTCTGCTGATCCTGCAAAAGAGGCTACTACTTTGTGTAATAATGTCCAAGGAAATTTTAGGAATGTTATACCTAAAGTAACTTGTTCATGA | 2739 | 0.3888 | MSQIMGETKDEGYEEELLDYEEEEEKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVMCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDKFISPCLLGMGFHNIGCSFSLEMGGLLVYSGFVAASVLKCTCLSVAPAWCDLKKFLKPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYSIAIVDVIISGKALITSWMEESRMAATVFMKHHVYDQLVVAILIFCTASSSLWVGHGLSTFDVLHYGAKGNGLIDDSEAFLKAWNAACVVTGNTIPTILVPEGHTFKLQPTNFKGPCKSKNINFQLMGTILAPQKSEWKGDVKKWIVFSMVDGLSLYGSGLIDGQGFEWWNNTKKPIKKLNYILKFQHLIISNLQALRFNSCNDLNMNGVNHINGPGGHINVHECKNVTISGLNITSPGNSPNTDGIDISYSSQVEISNSFIGVGDDCIAIKGGCSHIKIHHIACGPGHGISIRSLKQNDKVEDVHVWNCSINGATNGARIKTWPLEGNGYARKISFEHITFINTTYPIIIDQNYGIKVKDEGGINVSDITYYDLKGTCAKDIAISLNCGTKYCSNITMNQINIISADPAKEATTLCNNVQGNFRNVIPKVTCS | 912 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal4g0222 | 912 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 32 | 248 | - | - | |
Lal4g0222 | 912 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 296 | 476 | - | - | |
Lal4g0222 | 912 | Pfam | DEAD/DEAH box helicase | 68 | 233 | IPR011545 | GO:0003676|GO:0005524 | |
Lal4g0222 | 912 | Gene3D | - | 533 | 910 | IPR012334 | - | |
Lal4g0222 | 912 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 112 | 451 | IPR027417 | - | |
Lal4g0222 | 912 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 32 | 248 | - | - | |
Lal4g0222 | 912 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 296 | 476 | - | - | |
Lal4g0222 | 912 | Pfam | Helicase conserved C-terminal domain | 330 | 437 | IPR001650 | - | |
Lal4g0222 | 912 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 74 | 247 | IPR014001 | - | |
Lal4g0222 | 912 | SUPERFAMILY | Pectin lyase-like | 532 | 911 | IPR011050 | - | |
Lal4g0222 | 912 | SMART | helicmild6 | 356 | 437 | IPR001650 | - | |
Lal4g0222 | 912 | Pfam | Glycosyl hydrolases family 28 | 572 | 899 | IPR000743 | GO:0004650|GO:0005975 | |
Lal4g0222 | 912 | CDD | SF2_C_DEAD | 317 | 446 | - | - | |
Lal4g0222 | 912 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
Lal4g0222 | 912 | Gene3D | - | 313 | 481 | IPR027417 | - | |
Lal4g0222 | 912 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lal4g0222 | 912 | CDD | DEADc_DDX39 | 49 | 243 | - | - | |
Lal4g0222 | 912 | Gene3D | - | 38 | 246 | IPR027417 | - | |
Lal4g0222 | 912 | SMART | pbh1 | 810 | 839 | IPR006626 | - | |
Lal4g0222 | 912 | SMART | pbh1 | 730 | 751 | IPR006626 | - | |
Lal4g0222 | 912 | SMART | pbh1 | 703 | 729 | IPR006626 | - | |
Lal4g0222 | 912 | SMART | pbh1 | 780 | 801 | IPR006626 | - | |
Lal4g0222 | 912 | SMART | pbh1 | 753 | 773 | IPR006626 | - | |
Lal4g0222 | 912 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 316 | 477 | IPR001650 | - | |
Lal4g0222 | 912 | SMART | ultradead3 | 62 | 256 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal4g0222 | Lal-Chr4 | 1393951 | 1403063 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal4g0222 | 5 | 478 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 80.287 | 0.0 | 732 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal4g0222 | K12812 | - | han:110891513 | 734.176 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal4g0222 | 4 | 1393951 | 1403063 | Lal4g0222 | 4 | 1393951 | 1403063 | ECH | |
Lal21g0340 | 21 | 2275973 | 2281460 | Lal4g0222 | 4 | 1393951 | 1403063 | ECH | |
Lal17g0234 | 17 | 1447458 | 1452513 | Lal4g0222 | 4 | 1393951 | 1403063 | LSH | |
Lal21g0340 | 21 | 2275973 | 2281460 | Lal4g0222 | 4 | 1393951 | 1403063 | LSH |