Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0221 ATGGTACAAGCAAAGAAGTTCAGAGGAGTAAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGTCACCCTTTACTGAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGATCAAGCAGCCATTTTGATGAATGGTCAAAATGCTAAGACAAATTTCCCTACATCAAAGAATCAAGGTGAAGATGCAACCCCTTGTGATGGTGACACTTTCTTGTCACCCAAGGCACTCTCAGAGCTCCTTAGCACAAAGCTCAGGAAATGCTGCAAAGACCCTTCTCCATCCCTCACTTGTCTGAGGCTAGATGCTGACAATTCTCACATTGGAGTATGGCAAAAAGGAGCAGGCTCACGTTCTGACTCTAACTGGGTCATGAGGGTAGAGCTTGGGAAGAAACAACACAAAGAAAGTGGTTCATCATCTACTATATCAACACCATGCACTGGTGGTGAAAATGATAATAATAATAATAATAATGTTGTTGTTGGAAATGAAGTATCAGAAGAAGATATAGTTGCTATGCAGATGATTGAAGAGCTACTTAATTGGAATTATCCTTGTGCCTCAACTTCAAGTACTCCTCAGCAGAACCTTCCATGTCAAAGTTCTTGA 639 0.4351 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQGEDATPCDGDTFLSPKALSELLSTKLRKCCKDPSPSLTCLRLDADNSHIGVWQKGAGSRSDSNWVMRVELGKKQHKESGSSSTISTPCTGGENDNNNNNNVVVGNEVSEEDIVAMQMIEELLNWNYPCASTSSTPQQNLPCQSS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0221 212 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lal4g0221 212 MobiDBLite consensus disorder prediction 140 167 - -
Lal4g0221 212 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lal4g0221 212 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 199 - -
Lal4g0221 212 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lal4g0221 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 199 - -
Lal4g0221 212 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lal4g0221 212 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lal4g0221 212 MobiDBLite consensus disorder prediction 145 167 - -
Lal4g0221 212 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lal4g0221 212 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lal4g0221 212 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0221 Lal-Chr4 1387798 1389541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0221 1 195 AP2-EREBP Transcription Factor Family AT5G25390 62.051 5.69e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal4g0221 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0221 - - lang:109326202 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0221 4 1387798 1389541 Lal4g0221 4 1387798 1389541 ECH
Lal21g0338 21 2263238 2264735 Lal4g0221 4 1387798 1389541 ECH
Lal7g1263 7 18118597 18119901 Lal4g0221 4 1387798 1389541 ECH
Lal19g1382 19 16631403 16632663 Lal4g0221 4 1387798 1389541 ECH
Lal21g0338 21 2263238 2264735 Lal4g0221 4 1387798 1389541 LSH