Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0220 ATGATGAACGTGATGATGCACTTATTACATGGGAGGGTCGATGTCACAATATATGAGATCAATACGCTACAATCTCTTAGCAATTTCAATCTATGCAACAAGTCTATTAAAGATTTTTCCTACACTTATTTCCTGGATTCAAATTTTGCAAACAAGGGTCAAAGTAGAAACTTGGGGAAGAAGCTTCTTACCCAACTCAAGAGTTTATTGCTGTGTCAATGTCATCCAGAGATTATTAGGATGGGTCTTTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGAAGGACTAGAATGGTAACAGATCAACCCTATAGACCCAAGTGGAATGAGACCTTTCACATTTATTGTGCACATTTGATCTCCAATATTGTTTTCACTGTCAAACAAGATAACCCTATTGGGGCAACTCTAATTGGAAGGGCTTATATACCTGTTGACCAAGTTATGAAGGGCAACATAGTAGAAACATGGGCACAGATATTAGATGTGGACCATAATCCTATACCAGGTGACTCTAAAATCCATGTTAAAATGCAATACTTTGATGTTAACAATCATAGCAATTGGTCTCAAGGAGGAATAAGGAGTCCACATTTTGAAGGAGTTCCACACACTTTCTTTAATAAAAAAAGTGGTTGCAAAGTTACTTTATACCAAGATGCACATGTCCTTAATGGTTCTATACCAAGGTTCTCATTGTCTGGAGGAAAATATTATCAACCTGGTAGGTGTTGGGAGGATATCTACAATGCCATTTTGGATGCTAAGCATTTTATATACATAACTGGTTGGTCTGTTTACACTGAAATAACTTTAGTTAGGGACCCAAACAAGCCAAAAATCACACTTGGGGAGCTTCTTAAGAAGAAAGCCAGTGAAGGTGTTAGTGTTCTTATGCTTGTCTGGGATGATAGGACTTCTGTTCCAGACTTTAAGAAAGATGGCTTAATGGCAACTCATGATCAAGAAATCGAACAATACTTCAGAAACACAAAGGTGCATTGTGTATTGTGTCCGCGTAATCCTGATGATGGAAGAAGCATAATTCAAGGTTTTGAGATTTCAACAATGTTCACTCATCACCAAAAGACTATAGTTGTTGACAGCCAAGTTTCTGGTGCTCGTGGACCGCAGCAGAAGCGAAACATTGTATGTTTTGTAGGTGGGATTGATCTATGTGATGGGAGATATGATACTCAAGAACATCCTTTATTTTCAACATTGAACTCTGTCCATCAAGATGATTTCCATCAGCCAAATTTCCCGGGTGCCTCGATTAAAAAAGGCGGTCCAAGAGAGCCATGGCATGACATTCACTGCAAGGTAGAAGGGCCAGTTGCATGGGATGTGTTGCAAAACTTTCAACAAAGGTGGGAGAAGCAAGTTGGGAAGCAAATTATTCTCCCTTCAAGCAAGCTTGATGAAATTCTTGTCCCTCGATCCGTTGTAGCGACAACGGATCAAAATGAGACATGGGATGTTCAGGTTTTTAGATCAATTGATGGTGGTGCAGCTACTGGCTTCCCACAAGATCCTGCTGAAGCTGCTGAAAAGGGCCTTGTTAGTGGGAAAGATAACATCATTGATAGAAGCATTCAGGATGCTTATATAAATGCTATTCGGCGTGCAAAGAATTTCATCTACATTGAGAATCAGTATTTCTTAGGGAGCTCATATTGTTGGAAATCATCTGATATAAAAGTTGAGGACATTGGTGCTTTGCATCTCATACCAAAGGAGCTTTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGCAGAGGTTTTGTGTGTACATTGTTATCCCAATGTGGCCAGAAGGTATACCTGAGAGTGCTTCAGTTCAAGCAATACTAGACTGGCAAAGAAGGACAATGGAAATGATGTATGCTGATATTGCTGAAGCCATTAAGAGAAAGGGAATTAGAGCACACCCTAAGGATTATTTGACATTTTTCTGCCTCGGAAACCTCGAGGCTAAGAAAAATAATATGGAATTTACTCCTAAGGAGCAACCAGAGGCTAACAGTGATTATAGTAGAGCACAAAAGGCCAGGAGATTCATGATCTATGTTCATGCCAAAATGATGATAGTGGATGATGAATACATAATAATTGGTTCAGCCAACATAAACCAAAGATCAATGGATGGTGCAAGGGACAGTGAGATTGCAATAGGAGCATTCCAACCACATTACTTAACATCTAATGGGCCACCAAGGGGTGAGATATATGGATTCAGAAGAGCATTGTGGTATGAACACCTTGGCAATGCTGATAATGATTCAAGCATTTTTGACAAGCCAGAAAGTGTAGAATGCATCAAGCTTGTGAACAATCTTGCTGAGTCAAACTGGGATGTATACTCAAAAGACACATTTGATGAATATAGAACATTTCACCACCTCATGTGTTACCCCATAGAAGTGACCAAATATGGAGCCGTAACAACCCTTCAAGGATTTGAATATTTTCCTGACACCAAGGCTAGGATTCTTGGTTCCAAATCAGATTACCTTCCTCCAATTCTCACCACCTAG 2541 0.3959 MMNVMMHLLHGRVDVTIYEINTLQSLSNFNLCNKSIKDFSYTYFLDSNFANKGQSRNLGKKLLTQLKSLLLCQCHPEIIRMGLYATVDLDKARVGRTRMVTDQPYRPKWNETFHIYCAHLISNIVFTVKQDNPIGATLIGRAYIPVDQVMKGNIVETWAQILDVDHNPIPGDSKIHVKMQYFDVNNHSNWSQGGIRSPHFEGVPHTFFNKKSGCKVTLYQDAHVLNGSIPRFSLSGGKYYQPGRCWEDIYNAILDAKHFIYITGWSVYTEITLVRDPNKPKITLGELLKKKASEGVSVLMLVWDDRTSVPDFKKDGLMATHDQEIEQYFRNTKVHCVLCPRNPDDGRSIIQGFEISTMFTHHQKTIVVDSQVSGARGPQQKRNIVCFVGGIDLCDGRYDTQEHPLFSTLNSVHQDDFHQPNFPGASIKKGGPREPWHDIHCKVEGPVAWDVLQNFQQRWEKQVGKQIILPSSKLDEILVPRSVVATTDQNETWDVQVFRSIDGGAATGFPQDPAEAAEKGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYCWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGQRFCVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYADIAEAIKRKGIRAHPKDYLTFFCLGNLEAKKNNMEFTPKEQPEANSDYSRAQKARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPHYLTSNGPPRGEIYGFRRALWYEHLGNADNDSSIFDKPESVECIKLVNNLAESNWDVYSKDTFDEYRTFHHLMCYPIEVTKYGAVTTLQGFEYFPDTKARILGSKSDYLPPILTT 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0220 846 PIRSF PLD_plant 1 846 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal4g0220 846 ProSiteProfiles C2 domain profile. 1 159 IPR000008 -
Lal4g0220 846 PANTHER PHOSPHOLIPASE D 6 846 IPR015679 -
Lal4g0220 846 Pfam Phospholipase D Active site motif 357 397 IPR001736 GO:0003824
Lal4g0220 846 Pfam Phospholipase D Active site motif 689 715 IPR001736 GO:0003824
Lal4g0220 846 Gene3D C2 domain 74 192 IPR035892 -
Lal4g0220 846 Pfam C2 domain 81 160 IPR000008 -
Lal4g0220 846 Gene3D Endonuclease Chain A 487 732 - -
Lal4g0220 846 PANTHER PHOSPHOLIPASE D ALPHA 3 6 846 - -
Lal4g0220 846 SMART C2_3c 12 158 IPR000008 -
Lal4g0220 846 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 80 185 IPR035892 -
Lal4g0220 846 SMART pld_4 688 715 IPR001736 GO:0003824
Lal4g0220 846 SMART pld_4 357 397 IPR001736 GO:0003824
Lal4g0220 846 Pfam Phospholipase D C terminal 765 836 IPR024632 -
Lal4g0220 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 397 IPR001736 GO:0003824
Lal4g0220 846 SUPERFAMILY Phospholipase D/nuclease 521 759 - -
Lal4g0220 846 Gene3D Endonuclease Chain A 235 486 - -
Lal4g0220 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 688 715 IPR001736 GO:0003824
Lal4g0220 846 SUPERFAMILY Phospholipase D/nuclease 194 469 - -
Lal4g0220 846 CDD C2_plant_PLD 8 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0220 Lal-Chr4 1381520 1385964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0220 7 846 Phospholipase D Gene Family (Wang group) AT3G15730 62.204 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0220 K01115 - gmx:100791688 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0220 4 1381520 1385964 Lal4g0220 4 1381520 1385964 ECH
Lal17g1246 17 13482662 13486936 Lal4g0220 4 1381520 1385964 ECH
Lal17g0232 17 1441637 1445151 Lal4g0220 4 1381520 1385964 LSH