Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0203 ATGGCCAGACCACAACAGCGTTACCGAGGCGTTCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACATCCAATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAGGATGCTGCTAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGTACAAGGGCAAGAACAAACTTCCCTTACAACCCAAATGCGTCTCAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTGACTGCTAAACTTCACAGGTGTTATATGGCTTCGCTTCAAATGACTAGGCCGTCGTCGTTGCCAGAGCCTCGGGGAATTATAGCTTCACCAAATAATGCAATTTCCACAAGCAACTTATTAGCTGTTAAAGGGAGTGGAACTGATGCAATGTTGTTGCCAAAGATGAGAGAACAGGAGGAGCAAGAAACAGGAGGGAACTGGGATTTCAAGAAGGTTAAAGTTGAAAGTTCTCAGCAGTTCAAGCCTCTTGAAGAAGATCATATTGAGCAAATGATAGAGGAGTTGGTTCATTATGGCTCTATTGAACTCTGTTCTGTTTTTCCATCTCAGGCTCATTGA 585 0.4376 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSLPEPRGIIASPNNAISTSNLLAVKGSGTDAMLLPKMREQEEQETGGNWDFKKVKVESSQQFKPLEEDHIEQMIEELVHYGSIELCSVFPSQAH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0203 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lal4g0203 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lal4g0203 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 189 - -
Lal4g0203 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lal4g0203 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lal4g0203 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lal4g0203 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lal4g0203 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Lal4g0203 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lal4g0203 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0203 Lal-Chr4 1265749 1267280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0203 1 192 AP2-EREBP Transcription Factor Family AT5G25190 64.062 1.08e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal4g0203 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0203 - - gmx:100819158 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0214 17 1319435 1320887 Lal4g0203 4 1265749 1267280 LSH