Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0200 ATGTACTTTACAATGGAAACACTCATGAGTCAAGAGCCTTATCTCTGTGTTAACACTAGAGAGCTTCCTCCAAAACCAAACACACCATTGCAGAATCCACATGAAAATAAGCACCATCAATCTCTTGAGGAACAAGAAGCAAGAAAGGAGACAAAGACTGATGCCTTATTATTGGATCTGAATGGTCCTTATGATGATTCTTCACTTCAGTGCAGCACACAGCTCAACCTTATAACCTGTTTGGACATGGATTCAGCTAAGACTTCATCAGAAGAAAACCCTCCTGGTGTTGATGATGCTGCTTCAGAGCCTAGAGTATTCTCTTGCAACTACTGCAAGAGAAAGTTCTATAGTTCACAAGCTCTGGGAGGACACCAAAATGCTCATAAAAGAGAGAGGTCAATAGCAAAGAGAAGCCAAAGGTTAGGAACACACTTAATGGCCTCAGCAGCAGCATTTGGGATACCTTTTCTTCATGATATGGCATCTTTACCCCTCCATGGTAATAAACCATTTGGAATTCAGGCTCATTCCTTGATTCATAAGCCTTCTCATTTTTCATCTAATATTATTGGGGTTGGAAGCACTTATGGACAACAACAAAATGGTTGGTCAAAATCAAGACCCCTTATCAGTCAACAACCTGGAATAGGTAAATTTGAAGTGGTAAATGTAAGAAGTTCCACGCTCAATTCTGCAGCCAATGCAGAAACAAGTGGATATGTTGTTAGTGGAACTCGTTTGAAGACTAGTCAAGATGATAGGAAGCTTCTTGATTTATCCTTAAAGCTCTAA 795 0.4 MYFTMETLMSQEPYLCVNTRELPPKPNTPLQNPHENKHHQSLEEQEARKETKTDALLLDLNGPYDDSSLQCSTQLNLITCLDMDSAKTSSEENPPGVDDAASEPRVFSCNYCKRKFYSSQALGGHQNAHKRERSIAKRSQRLGTHLMASAAAFGIPFLHDMASLPLHGNKPFGIQAHSLIHKPSHFSSNIIGVGSTYGQQQNGWSKSRPLISQQPGIGKFEVVNVRSSTLNSAANAETSGYVVSGTRLKTSQDDRKLLDLSLKL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0200 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Lal4g0200 264 MobiDBLite consensus disorder prediction 36 51 - -
Lal4g0200 264 SUPERFAMILY beta-beta-alpha zinc fingers 104 135 IPR036236 -
Lal4g0200 264 MobiDBLite consensus disorder prediction 18 51 - -
Lal4g0200 264 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 264 IPR044246 GO:0009788
Lal4g0200 264 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Lal4g0200 264 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 264 - -
Lal4g0200 264 Gene3D Classic Zinc Finger 98 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0200 Lal-Chr4 1251035 1251829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0200 43 220 C2H2 Transcription Factor Family AT5G10970 46.154 2.55e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal4g0200 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0200 - - lang:109326246 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0211 17 1296620 1297453 Lal4g0200 4 1251035 1251829 LSH
Lal21g0314 21 2106016 2106873 Lal4g0200 4 1251035 1251829 LSH
Lal10g0030 10 312041 312802 Lal4g0200 4 1251035 1251829 PCT
Lal4g0200 4 1251035 1251829 Lal10g0030 10 312041 312802 PCT