Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0192 ATGGGTTATCTCAATTCAGTGTTGTCCTCTTCAAGCCAAGTTCATGCTGCTGCTGATGCACCTGTCACCGGTGGGGGACTCAGGCAAATGTTTGTGCTCTCCCGCTCTGGAGGTCGCCGGGTTGGAGTGCCTGGTGGTATGCTTCCTGGAGTGCTCCTCTGTGTTGGGCTCTGGCAGCCACAGTCTAGGCCTGCATTTGCCGTAGAGCAAAAAGTTAGTCACGATGGTAAATTCAGCTATGGGTATGCTAGCTCTCCTGGCAGGCGATCTTCAATGGAAGACTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAGTCGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGTGGTGTTCGTGCTGCTGAGTATGTCAAGCAAAACCTGTTTAGCAATTTGATGAGTCACCCAAAATTCATTTCTGACACTAAATCAGCAATATCTGACGCATATAATCATACCGACTCTGAGTTTCTGAAATCAGAACATAGTCATAACAGAGATGCTGGGTCAACTGCTTCCACTGCCATTCTAGTTGGTGATCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGAGGTGGTAATGCAATTGCCGTATCTCGAGATCACAAGCCAGACCAAAGTGATGAGAGGCAAAGGATTGAAGATGCAGGGGGCTTTGTCATATGGGCTGGAACTTGGAGAGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACAACTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAGGAAAAGATCGACAGCACTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGGTTAAACCAATTGTGGAAGCAGAGGAGGCTGCAAAGATACTAATGTTAGAAGCATCTAAAAGAGGCAGTGCTGACAATATCACTTGTGTTGTTGTTCGTTTCTCGGTGAACGAAGGTGCTTCTTTTCGAAGTAGCTCTGGCTAA 1017 0.4612 MGYLNSVLSSSSQVHAAADAPVTGGGLRQMFVLSRSGGRRVGVPGGMLPGVLLCVGLWQPQSRPAFAVEQKVSHDGKFSYGYASSPGRRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGVRAAEYVKQNLFSNLMSHPKFISDTKSAISDAYNHTDSEFLKSEHSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQSDERQRIEDAGGFVIWAGTWRVGGVLAVSRAFGDRQLKQYVVADPEIQEEKIDSTLEFLILASDGLWDVVSNEEAVAMVKPIVEAEEAAKILMLEASKRGSADNITCVVVRFSVNEGASFRSSSG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0192 338 ProSiteProfiles PPM-type phosphatase domain profile. 79 325 IPR001932 -
Lal4g0192 338 SUPERFAMILY PP2C-like 62 325 IPR036457 -
Lal4g0192 338 Pfam Protein phosphatase 2C 105 318 IPR001932 -
Lal4g0192 338 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 69 332 - -
Lal4g0192 338 SMART PP2C_4 69 323 IPR001932 -
Lal4g0192 338 PANTHER ALPHABET, ISOFORM E-RELATED 69 332 - -
Lal4g0192 338 ProSitePatterns PPM-type phosphatase domain signature. 110 118 IPR000222 GO:0043169
Lal4g0192 338 SMART PP2C_SIG_2 74 325 IPR001932 -
Lal4g0192 338 Gene3D - 67 329 IPR036457 -
Lal4g0192 338 CDD PP2Cc 78 325 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0192 Lal-Chr4 1184673 1190064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0192 1 337 PP2C-type Phosphatase Gene Family AT4G31750 73.887 2.72e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0192 K17506 - gmx:547661 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0192 4 1184673 1190064 Lal4g0192 4 1184673 1190064 ECH
Lal17g0191 17 1160086 1165226 Lal4g0192 4 1184673 1190064 LSH
Lal21g0297 21 1969052 1974424 Lal4g0192 4 1184673 1190064 LSH