Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0178 ATGGAAGGTAGTGCCATGCAGAATCCGCGTACGGTGGAGGAAGTCTTCACCGATTTCAAAGCCCGTAGAACTTCCATCATTAAAGCTCTTACCATTGATGTTGAAGACTTCTTTCACCAATGTCATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGTGAACACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCTTTGGGTATTAACTTTGCAAGAGATGGGATGCAACAAAAGGACTGGCTAACCTTGGTCGCTGTCCACAGTGATGCATGGTTACTTTCTGTGGCTTTCTATTTTGGTGCTAGGTTTGGATTTGATCAGGCTGATAGGAAACGACTGTTTACTATGATAAATGATCTTCCAACAATATCTGAGGTTGTCACAGGTTTGGCCAAGAAACAGGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAACCCAAATCAAATTCTAAGGGAGGTTCTGAACCTCAAGTTGAGTATTCCAGAGGAGTGGATGAGGATGAGAATGGTTTTGAAGAGGAAGATGAGGAGCATGGAGAGAGTAAATGTGGGGCATGTGGAGAGAACGGTGCAGAGGAGCAGTTCTGGATTTGCTGTGACTCATGTGAGAGGTGGTTCCATGGAAAGTGTGTGAAAATTACTCCTGCAAGAGCTGACCATATCAAACATTATAAATGTCCATCTTGCAGCCACAAGAGATCTCGACCAATTTCATGA 756 0.4392 MEGSAMQNPRTVEEVFTDFKARRTSIIKALTIDVEDFFHQCHPEKENLCLYGFPSEHWEVNLPAEEVPPELPEPALGINFARDGMQQKDWLTLVAVHSDAWLLSVAFYFGARFGFDQADRKRLFTMINDLPTISEVVTGLAKKQGKEKSSVSNHSSNKPKSNSKGGSEPQVEYSRGVDEDENGFEEEDEEHGESKCGACGENGAEEQFWICCDSCERWFHGKCVKITPARADHIKHYKCPSCSHKRSRPIS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0178 251 SUPERFAMILY FYVE/PHD zinc finger 185 247 IPR011011 -
Lal4g0178 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 249 - -
Lal4g0178 251 SMART PHD_3 195 243 IPR001965 -
Lal4g0178 251 CDD PHD_AL_plant 196 245 IPR044104 -
Lal4g0178 251 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Lal4g0178 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Lal4g0178 251 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Lal4g0178 251 MobiDBLite consensus disorder prediction 144 196 - -
Lal4g0178 251 MobiDBLite consensus disorder prediction 150 169 - -
Lal4g0178 251 Pfam PHD-finger 196 244 IPR019787 -
Lal4g0178 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lal4g0178 251 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0178 Lal-Chr4 1117072 1121114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0178 3 248 Alfin-like Transcription Factor Family AT3G42790 65.354 4.33e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal4g0178 Alfin 6.6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0178 - - pop:7476667 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0178 4 1117072 1121114 Lal4g0178 4 1117072 1121114 ECH
Lal21g0279 21 1847545 1850781 Lal4g0178 4 1117072 1121114 ECH
Lal17g1508 17 16461772 16466748 Lal4g0178 4 1117072 1121114 ECH
Lal4g1532 4 19424366 19428781 Lal4g0178 4 1117072 1121114 ECH
Lal21g0279 21 1847545 1850781 Lal4g0178 4 1117072 1121114 LSH