Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0172 ATGGAGGATCTGAAAGAGGAAGAAGAGAAGGGAGGGGAAGAAGTATTAGGTTCAAGCTTGACGATGGAGAAAGTAGCGGCTGCTAAGAAATTCATAGAGAATCATTATAGGGCACAGATGAAGAACATACAAGACCGCAAGGAGAGGCGTTGGGTTTTAGAACGAAAATTAGCTTCTTCAGATGTGCCAAACGAAGAACGAATCAACCTCATCAAAGATTTAGAAAGGAAGGAGACTGAATATATGCGACTAAAAAGGCACAAGATTTGTGTAGATGATTTTGAGCTTTTGACCATCATTGGAAGGGGGGCCTTTGGGGAGGCTTACTATGTAAGGGTTGTTTCTGGTATTACTTGTTTGCTAACTGGTTCAATACAGGTTAGACTGTGTCGAGAGAAGAAATCAGGAAATATATATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTCAAGAGAGGCCAGGTGGAACACGTTAGAGCTGAGAGGAACTTGCTTGCCGAAGTTGCCAGCCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGACTACTTGTATCTGATTATGGAGTATCTGCCTGGAGGTGATGTCATGACTCTACTGATGAGGGAAGACACCTTGAATGAAGATGTTGCTAGGTTTTACATTGCACAGAGTGTTCTGGCCATAGAGTCTATTCACAGGCACAATTACATTCACAGAGATATTAAACCAGATAACCTGCTTCTGGATAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAACCTCTCGATTGTACAACCCTGACTACACTGCATGAACATCAGACCATGGATGATGAAAAATCGGTAGAGCCAATGGATATCGATGGATGTTTTCCTGACACGGACAATCATAGCAGCTGGAGAAGTCCACGTGAACAGCTTCAGCATTGGCAGATGAACAGAAGGAAGTTGGCATTTTCAACAGTGGGGACACCAGACTACATTGCACCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAACCATTTAAGGTTTCCAGAAGATGCCCAGTTGACACTTGAGGCTAAGGATCTTATCTACAGGTTGCTGTGTGATGTCGATCATAGGTTAGGTACTCAAGGGGCACGTGAAATCAAGGCTCATCCTTGGTTCAGGGGCGTGGAGTGGGAGAAACTGTATGAAATGGAGGCAGCCTTTAAACCACAAGTTAATGATGAGCTGGATACCCAAAACTTCATGAAATTTGATGAAGTAGATCCACCAACAGCAGCAAGAACTGGGTCCGGATCCTCACGAAAGATGCTAACTCCCAAAGATCTTAACTTTGTTGGTTACACTTACAAGAACTTCGATGCTGTAAAAGAAGGGCTTCGCCAGTCTCTTGGTGAATCCATTCAGGAATATGCTTCCAAACGAGCAGCTGAGGAAGCAGGCTTACAAATGCTTGCCTCATCTGGGGATCCCATGTTACCATAA 1584 0.4324 MEDLKEEEEKGGEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQDRKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEAYYVRVVSGITCLLTGSIQVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLMREDTLNEDVARFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLTTLHEHQTMDDEKSVEPMDIDGCFPDTDNHSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDAQLTLEAKDLIYRLLCDVDHRLGTQGAREIKAHPWFRGVEWEKLYEMEAAFKPQVNDELDTQNFMKFDEVDPPTAARTGSGSSRKMLTPKDLNFVGYTYKNFDAVKEGLRQSLGESIQEYASKRAAEEAGLQMLASSGDPMLP 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0172 527 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal4g0172 527 SUPERFAMILY Protein kinase-like (PK-like) 77 470 IPR011009 -
Lal4g0172 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 505 - -
Lal4g0172 527 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lal4g0172 527 ProSiteProfiles Protein kinase domain profile. 94 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0172 527 Pfam Protein kinase domain 312 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0172 527 Pfam Protein kinase domain 126 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0172 527 SMART pkinase_C_6 421 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal4g0172 527 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 505 - -
Lal4g0172 527 Gene3D Phosphorylase Kinase; domain 1 117 195 - -
Lal4g0172 527 Gene3D Transferase(Phosphotransferase) domain 1 196 437 - -
Lal4g0172 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Lal4g0172 527 Gene3D Phosphorylase Kinase; domain 1 5 116 - -
Lal4g0172 527 CDD STKc_NDR_like 92 484 - -
Lal4g0172 527 SMART serkin_6 94 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0172 Lal-Chr4 1085301 1093282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0172 1 526 AGC Kinase Gene Family AT4G33080 78.072 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lal4g0172 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0172 K08790 - gmx:100815717 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0172 4 1085301 1093282 Lal4g0172 4 1085301 1093282 ECH