Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0164 ATGACTCCTGATTCTCTGAACCCGCCAGATCCTTCCATAAATGATCAAAATCATCTCTTATGTGCTCCTAATAATCATAATTCAACTAACTCTTTCCCATGTCGTGCCTTCTTTGAAATACACGATCAAAGACAAATTGGAGATATCAGATACTTTAGACAAGATGATCAACAGGATGGCAAGCGGGTATTTCATGGAGAATCATCAAACACTCACCAAGTGTACAACAACTCATCCTTGGTTTCACCTCATGAGCCAGTTATGGCAGATCCAAGCAATGCACGTGACCATAATTTGTCCATGTACAAAATAGAGCTGCAGGAAGAGAACAAAAGCAGTTACGAGTCTGCAAGATACATGTCTTCAAAGATAAGGTTGACGAGAAAAATGGGAAGCTCCTCCAACAATCCTTCTAGTTACAAGAGCAATAGCATCATCAGTAGGGTTTGTGCGGATTGTAACACAAGCAGTACCCCACTCTGGAGGACTGGTCCTAATGGTCCTAAGACGCTTTGCAATGCATGCGGAATTAGACAGAGGAAGGCAAGAAAGGCAATGGCAGAAGCTGCAAACAGTTGTTTTGCTACAAAGAGTAGAGTGCATCACAAGCAAAATAATAAGTGCAAGGCCTCTCCTACTTCTTCTATAACTACTACTGTAATAGGCACATCTCAAGGGGAAAAGAACCTTCATTTTAAGGACTTTGCAATTAGTAATATGACGAATAACTCGGCCATTCAGCTTCTGAGAGATGAAGAAGTTGCTCAAGCAGCGTTGCTTCTCATGGATTTATCTTCTGCCTTTCTTCACTTTTAA 816 0.4118 MTPDSLNPPDPSINDQNHLLCAPNNHNSTNSFPCRAFFEIHDQRQIGDIRYFRQDDQQDGKRVFHGESSNTHQVYNNSSLVSPHEPVMADPSNARDHNLSMYKIELQEENKSSYESARYMSSKIRLTRKMGSSSNNPSSYKSNSIISRVCADCNTSSTPLWRTGPNGPKTLCNACGIRQRKARKAMAEAANSCFATKSRVHHKQNNKCKASPTSSITTTVIGTSQGEKNLHFKDFAISNMTNNSAIQLLRDEEVAQAALLLMDLSSAFLHF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0164 271 Pfam GATA zinc finger 150 184 IPR000679 GO:0006355|GO:0043565
Lal4g0164 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 145 186 - -
Lal4g0164 271 CDD ZnF_GATA 149 181 IPR000679 GO:0006355|GO:0043565
Lal4g0164 271 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 270 - -
Lal4g0164 271 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 14 270 - -
Lal4g0164 271 MobiDBLite consensus disorder prediction 7 21 - -
Lal4g0164 271 MobiDBLite consensus disorder prediction 1 21 - -
Lal4g0164 271 ProSitePatterns GATA-type zinc finger domain. 150 175 IPR000679 GO:0006355|GO:0043565
Lal4g0164 271 Gene3D - 144 189 IPR013088 GO:0006355|GO:0008270
Lal4g0164 271 SMART GATA_3 144 195 IPR000679 GO:0006355|GO:0043565
Lal4g0164 271 ProSiteProfiles GATA-type zinc finger domain profile. 144 180 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0164 Lal-Chr4 1027439 1029879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0164 116 270 C2C2-Gata Transcription Factor Family AT4G26150 32.381 9.04e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal4g0164 GATA 4.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0164 - - gmx:102659929 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0720 8 5126907 5129891 Lal4g0164 4 1027439 1029879 PCT
Lal4g0164 4 1027439 1029879 Lal8g0720 8 5126907 5129891 PCT