Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0158 ATGAAGTCTATGAATGATAGTAACAACACCACAGATGATGGAAACAACCATCATAACTGGTTGGGGTTCTCACTCTCACCCCACATGAAAATGGATCATGTTACTTCTGTCCCTTCTCATCATCACTACCATCATCATCAACAACAACAACAACCTCAGTCTTCTGCAGCTGCTGCTTCTATTTCCAACACTGTTCCCACATCCTTCTATTTGTCTCCTTCTCACATTAGCAGCAACTCTGGATTCTCTTATGGTGTTGGTGAAAACAGCATCTTTCATTCTCCTTTGACTGTTATGCCTCTCAAATCAGATGGTTCACTTTGTATAATGGAAGCTCTCACTAGATCTCAAACACAAGTGATGTTGCCAAGTTCTTCTCCCAAACTGGAGGACTTTCTAGGTAGTGGTGCAACTATGGGGACACAAGAATATGTAGACCGTGAAAGAGAAGCAATGGCTCTTAGTTTAGACAGCATTTATTATAACCAACAAAATGATCATGATTCTCAAGCCAACAGAGACCATTCACTAGACCTACTTTCAGAACCCTTCACCCAACAAGAGCATCATCATATAACTAATCTCCAATCACATACATATTATTCAGGACTCACTTACCAAGGTATGTATCAAACACCATTACAGGAAGAAACAAATAAGGAAACTCATGTTGCAGTTTTTGGCTCCCAAATGGCAGAATATTCTGCTCAAATAGCTCAACAAATGAACAGTAACATTGGGAGTGATGATCGTGGAGCTTCTGAATCTCTTGGTTCAGTAGGGTGTGGAGAGTTACAGTCACTGAGCCTATCCATGAGTCCTGGTTCTCAATCTAGCTGTGTAACAATTCCACGCCAGATCTCACCTTCTGGAACTGACTCAGTGGTTGTGGAGACAAAAAAGAGAGGTTCGGGTAAGCTTGGACAGAAGCAACCGGTGCATAGGAAATCTATTGACACATTTGGCCAGAGAACTTCGCAGTATCGGGGTGTCACAAGGCATAGGTGGACTGGCAGATATGAAGCTCATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTCAAGTACTGGGGGCCTTCAACACATATTAATTTTCCGTTGGAAAATTACCAAACTGAACTTGAAGGAATGAAGAACATGAGTAGGCAGGAATATGTTGCTCACTTGAGAAGAAAAAGCAGTGGTTTCTCAAGAGGAGCTTCAATGTACAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCTAGGATAGGCAGAGTTGCAGGGAACAAGGACCTCTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTCCGAGGGGTAAATGCAGTCACAAACTTTGATATATCGAGATATGATGTAGAAAGGATCATGGCCAGTAACACTCTTCTTGCTGGTGAGCTAGCAAGGAGAAACAAAGATAATCATCCAAGATCTGAGGCCATTGAGTATAATAATAACAATGGTGTACCAAACCCAACTAATGTGGAAGCAGTTCAAGCTAGAAACAACAATGAAAATGGTTCACACTGGAAGATGGATTTGTTTCAGCAGCAGCAACAGCAGTCAAATAATAGCTGTGAACAAAAAATGAACTGTGGAAATTATAGAAACTCATCTTTCTCAATGGACCTACAAGATCTCATTGCAATTGATTCAGTAGGTTCTGGCCAACCCATGCAGGGTAACTCAAACAAGATAGGAACTCATTTTTCAAACCCCTCCTCTATGGTCACAAGTTTAAGCAGCTCAAGAGAGGCCAGCCCTGATAAAACGGGTCCCTCACTTCTATTTCCGAAGCCTCAAATGGAAACAAAGATTGGTAGTGGTGGTGTTAGTTCTTGGTTTACCTCTCAAATGAGGCCAGCTGCTGCTATACCTCTCTCTCACTTGCCAGTTTTTGCTGCATGGAATGATACCTAG 2031 0.4254 MKSMNDSNNTTDDGNNHHNWLGFSLSPHMKMDHVTSVPSHHHYHHHQQQQQPQSSAAAASISNTVPTSFYLSPSHISSNSGFSYGVGENSIFHSPLTVMPLKSDGSLCIMEALTRSQTQVMLPSSSPKLEDFLGSGATMGTQEYVDREREAMALSLDSIYYNQQNDHDSQANRDHSLDLLSEPFTQQEHHHITNLQSHTYYSGLTYQGMYQTPLQEETNKETHVAVFGSQMAEYSAQIAQQMNSNIGSDDRGASESLGSVGCGELQSLSLSMSPGSQSSCVTIPRQISPSGTDSVVVETKKRGSGKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEGMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDNHPRSEAIEYNNNNGVPNPTNVEAVQARNNNENGSHWKMDLFQQQQQQSNNSCEQKMNCGNYRNSSFSMDLQDLIAIDSVGSGQPMQGNSNKIGTHFSNPSSMVTSLSSSREASPDKTGPSLLFPKPQMETKIGSGGVSSWFTSQMRPAAAIPLSHLPVFAAWNDT 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0158 676 MobiDBLite consensus disorder prediction 604 638 - -
Lal4g0158 676 CDD AP2 425 486 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 PRINTS Ethylene responsive element binding protein signature 328 339 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 PRINTS Ethylene responsive element binding protein signature 466 486 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 Gene3D AP2/ERF domain 426 486 IPR036955 GO:0003700|GO:0006355
Lal4g0158 676 Gene3D AP2/ERF domain 326 392 IPR036955 GO:0003700|GO:0006355
Lal4g0158 676 Pfam AP2 domain 427 476 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 Pfam AP2 domain 327 382 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 SMART rav1_2 327 396 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 SMART rav1_2 426 490 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 CDD AP2 326 390 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 SUPERFAMILY DNA-binding domain 425 486 IPR016177 GO:0003677
Lal4g0158 676 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 674 - -
Lal4g0158 676 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 674 - -
Lal4g0158 676 SUPERFAMILY DNA-binding domain 326 392 IPR016177 GO:0003677
Lal4g0158 676 MobiDBLite consensus disorder prediction 36 59 - -
Lal4g0158 676 ProSiteProfiles AP2/ERF domain profile. 426 484 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 ProSiteProfiles AP2/ERF domain profile. 327 390 IPR001471 GO:0003700|GO:0006355
Lal4g0158 676 MobiDBLite consensus disorder prediction 604 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0158 Lal-Chr4 984112 988655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0158 1 510 AP2-EREBP Transcription Factor Family AT4G37750 51.737 8.25e-157 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal4g0158 AP2 4.7e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0158 4 984112 988655 Lal4g0158 4 984112 988655 ECH
Lal21g0252 21 1656702 1661389 Lal4g0158 4 984112 988655 LSH
Lal8g0851 8 6173734 6178147 Lal4g0158 4 984112 988655 PCT
Lal10g0761 10 15309532 15313287 Lal4g0158 4 984112 988655 PCT
Lal4g0158 4 984112 988655 Lal8g0851 8 6173734 6178147 PCT
Lal4g0158 4 984112 988655 Lal10g0761 10 15309532 15313287 PCT