Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0157 ATGAACTTCAACATGGATTCTGATAAAGCGAAGCTGTTCATTGGCGGGATTTCTCGGGAAACTACCAATGATATTCTGAGAGACCACTTCTCTATGTACGGCACCGTTTCCGATTCCACGGTTTCAGTAGACCGCATCACTCGTTGCCCTAGAGGTTTTGGCTTTGTTACCTTCTCTGATCTCCCTGCAGCTGAAAAAGCTCTTCAAGACACCCATGTTATTCTTGGAAGAACGGTAGAAGTGAAGAAAGCAATACCGAGAAGTGAACAGCAGCACCAAAACCAAATACGCAGTAGAGGGGTGAGTAACTATAGTAGTAGTAGTAAGAATGACTTTAGCAGCAACCACATTAGGACTAAAAAGATATTTGTAGGAGGTTTATCTGCTGATATATCTGAGGAAGAGTTTAAGAGATACTTTGAGAGGTTTGGTCGGATAACAGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCTAGGGGGTTTGGGTTCATCACTTTTGATTCAGAAGAATCAGTTGAACATGTTGTGGCGGAAAGTTTTCATGACTTGGGTGGTAGACAGGTAGAGGTCAAAAGAGCGGTGCCAAAAGAGGGGAACCATGTTGGTGATGGTTTTAACAAATCTAGATATGATAAGAGTGAAAGAGGAACCTCTCAAAGTTATTCTCCTCATGGTCCTAGGTACATGTCACCTGGCTTTGCACCTCTGCCTTATTATGGCGGTGGTGGGGTTTATACTTATGGTTCAAACCCATATGGTTATTGCTACACTACGGGTGAGTATGGGGGGAATGTGTATGCAATTCTGTCTGATGCTTCTAGTAACTTCTGGTATGGGCCCATGATAGCTGGTCCTCAGCCATGTCAGATTCCTTATGCCAATGCCTCACCAAATGTTGTGTATGCTGGTGCTAGGGTTGGAATAGTAGAGTGTGGTCCTGGAACCAGGGGGTACAATGGCCTTCTTGGTTCTGCAACAAACTGGAAATTTGGTCCTGGCAATGGATTTGGTCCTGACTACATGATACCACATCAAAGGGAGAAGCGCAGTGTTGATTACTCAAGGTTGAAGAGAAACAATGGAGAAATTTCTAGTTAA 1104 0.4411 MNFNMDSDKAKLFIGGISRETTNDILRDHFSMYGTVSDSTVSVDRITRCPRGFGFVTFSDLPAAEKALQDTHVILGRTVEVKKAIPRSEQQHQNQIRSRGVSNYSSSSKNDFSSNHIRTKKIFVGGLSADISEEEFKRYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVEHVVAESFHDLGGRQVEVKRAVPKEGNHVGDGFNKSRYDKSERGTSQSYSPHGPRYMSPGFAPLPYYGGGGVYTYGSNPYGYCYTTGEYGGNVYAILSDASSNFWYGPMIAGPQPCQIPYANASPNVVYAGARVGIVECGPGTRGYNGLLGSATNWKFGPGNGFGPDYMIPHQREKRSVDYSRLKRNNGEISS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0157 367 MobiDBLite consensus disorder prediction 199 216 - -
Lal4g0157 367 Gene3D - 2 97 IPR012677 -
Lal4g0157 367 MobiDBLite consensus disorder prediction 88 112 - -
Lal4g0157 367 MobiDBLite consensus disorder prediction 199 228 - -
Lal4g0157 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Lal4g0157 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Lal4g0157 367 SMART rrm1_1 121 193 IPR000504 GO:0003723
Lal4g0157 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Lal4g0157 367 MobiDBLite consensus disorder prediction 85 112 - -
Lal4g0157 367 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 324 - -
Lal4g0157 367 Gene3D - 117 204 IPR012677 -
Lal4g0157 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 324 - -
Lal4g0157 367 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Lal4g0157 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Lal4g0157 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Lal4g0157 367 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0157 Lal-Chr4 972308 974106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0157 12 245 Eukaryotic Initiation Factors Gene Family AT4G34110 25.316 2.73e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0157 4 972308 974106 Lal4g0157 4 972308 974106 ECH
Lal17g0141 17 870913 878116 Lal4g0157 4 972308 974106 LSH
Lal21g0251 21 1640029 1644798 Lal4g0157 4 972308 974106 LSH