Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0122 ATGGCTCTTCTTGTAGACAACAACTGTGAAGCAATTTTATTCCCTCATCATCATCACCACAAATCTGTCCCTGCACCATTCCTGGCCAAAACATACCAACTTGTGGATGATCCCACCACCGATCACATCGTTTCTTGGGGCGAAGATGACACTACCTTCGTCGTTTGGTGTCCCTCTCAGTTCGCTACAGATCTTCTCCCTAACTACTTCAAACACAACAACTTATCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGGAAGATTGTACCAGATAGGTGGGAGTTTGCAAATGAGTTATTCAAGAAAGGAGAGAAGCACTTGCTATGTGACATCCGTAGAAGAAAAACGGCGCAGCCTCAACAAGTTCCCATGAATCATCATCATTATGATTCTTCACTAGGAATCAACGGTCCTTTTTTCTTTCCATTCACTAGCAGAGTCAGCATTTCTCCACCCTATGACTCCGACGAACAACCCAATTTGTGTGACTCTCCGCCACTCACTCCAGTTATTAACGGGGTTGCTGTTAACTATAATAGTTCCGTTACGGCTCTGTCGGAGGACAATGAAAGACTGAGACGGCGCAACAATATCCTCACGTCGGAGCTTGCACACATGAAGAAGCTGTACAATGATATCATCTACTTTGTTCAGAACCATGTCAAACCTGTGGCTCCTACCAACACTTACTCACCTTTTCTACTCTGCAATGCACCTCACCAAACAGTGTCTAGTGTTTCAATGATGCAAAGGCCAATGAACCAGCTTCTTGGTTATTACTCTACTACTAGTACTAACCCTAACCAGCAACTGCCTTATTCTACTACTCAAACTCAAGAGCAAGCTCATGCTGTGAATTCTCCCACCCACACTTCAAGGAGCTCAGTAACTGATGTTGAATGGCATAGTAGTAACAACTGCAAGACTAAGCTCTTTGGAGTTTCACTACAGTCCAAAAAAAGGGTGCACCCTGAGGATGGATCCAATAATCCCACTAATTCAGAGACCAACAAAGTTCGTTTGGTTTTGGAAAAGGATGACTTGGGCTTGAATCTCATGCCTCCTAGTTCATCTTATTAG 1086 0.4401 MALLVDNNCEAILFPHHHHHKSVPAPFLAKTYQLVDDPTTDHIVSWGEDDTTFVVWCPSQFATDLLPNYFKHNNLSSFVRQLNTYGFRKIVPDRWEFANELFKKGEKHLLCDIRRRKTAQPQQVPMNHHHYDSSLGINGPFFFPFTSRVSISPPYDSDEQPNLCDSPPLTPVINGVAVNYNSSVTALSEDNERLRRRNNILTSELAHMKKLYNDIIYFVQNHVKPVAPTNTYSPFLLCNAPHQTVSSVSMMQRPMNQLLGYYSTTSTNPNQQLPYSTTQTQEQAHAVNSPTHTSRSSVTDVEWHSSNNCKTKLFGVSLQSKKRVHPEDGSNNPTNSETNKVRLVLEKDDLGLNLMPPSSSY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0122 361 MobiDBLite consensus disorder prediction 262 303 - -
Lal4g0122 361 PANTHER BNAC06G00310D PROTEIN 270 358 - -
Lal4g0122 361 PANTHER BNAC06G00310D PROTEIN 14 232 - -
Lal4g0122 361 Coils Coil 184 211 - -
Lal4g0122 361 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal4g0122 361 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal4g0122 361 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal4g0122 361 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal4g0122 361 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Lal4g0122 361 MobiDBLite consensus disorder prediction 317 341 - -
Lal4g0122 361 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal4g0122 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 270 358 IPR027725 -
Lal4g0122 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 232 IPR027725 -
Lal4g0122 361 Gene3D - 18 118 IPR036388 -
Lal4g0122 361 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0122 Lal-Chr4 737093 738681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0122 1 359 HSF AT1G46264 52.243 5.80e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal4g0122 HSF_DNA-bind 6.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0122 K09419 - gmx:100781389 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0122 4 737093 738681 Lal4g0122 4 737093 738681 ECH