Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0120 ATGGCTGCAACCATAGCCTCCTCCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTTCATCAACACTGTTAAATGTCTCCCTTCAATAACAACATCCACCAACCGCTTCATGTTACCATCTCTATCACTCTCCTACATAGTACAACCTTTGTCCATTAGTACCATCTCACACAAGTTATGGGACCCTAAAATTTCTACTGCTGTTGCAGAACAAGAAGTGGTTGTTGCTGCTGAGGTTGATGTTGAAGAGAAGGTGGAGGAGAACACTAAGCTATATTTCGGGAATTTGCCTTATAATGTAGACAGTGCTCAACTTGCAGGGTTAATTCAGGATTATGGTAGTGCAGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTAATAGAAAATCTTGATGGAAGGGAGTTCACTGGTCGAACATTGCGAGTGAACTTCTCTAACAAACCAAAACCAAAACAACCCTTGTACCCGGAAACTGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTGATACAAGCCTTTCAAGAATATGGAAATGTGGTTGGAGCTAGGGTCTTATATGACGGCGAAACTGGAAGGTCGCGGGGTTATGGCTTTGTTTGCTATTCAACAAAAGAAGAAATGGAATCTGCCCTTGCATCCTTGAATGATGTGGAAATAGAAGGAAGGGCAATACGTGTAAGCTTGGCTGAAGGAAAACGTTCACAAGGTTAA 792 0.4141 MAATIASSFFSSSSSSSSFINTVKCLPSITTSTNRFMLPSLSLSYIVQPLSISTISHKLWDPKISTAVAEQEVVVAAEVDVEEKVEENTKLYFGNLPYNVDSAQLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGREFTGRTLRVNFSNKPKPKQPLYPETEHKLFVGNLSWSVTSESLIQAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKEEMESALASLNDVEIEGRAIRVSLAEGKRSQG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0120 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Lal4g0120 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 161 IPR000504 GO:0003723
Lal4g0120 263 Gene3D - 65 169 IPR012677 -
Lal4g0120 263 SUPERFAMILY RNA-binding domain, RBD 172 260 IPR035979 GO:0003676
Lal4g0120 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 258 IPR000504 GO:0003723
Lal4g0120 263 Gene3D - 170 263 IPR012677 -
Lal4g0120 263 SUPERFAMILY RNA-binding domain, RBD 78 173 IPR035979 GO:0003676
Lal4g0120 263 SMART rrm1_1 181 254 IPR000504 GO:0003723
Lal4g0120 263 SMART rrm1_1 90 163 IPR000504 GO:0003723
Lal4g0120 263 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 171 261 - -
Lal4g0120 263 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 66 128 - -
Lal4g0120 263 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 125 165 - -
Lal4g0120 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Lal4g0120 263 PANTHER TRANSFORMER-2-RELATED 125 165 - -
Lal4g0120 263 PANTHER TRANSFORMER-2-RELATED 171 261 - -
Lal4g0120 263 PANTHER TRANSFORMER-2-RELATED 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0120 Lal-Chr4 730170 731850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0120 66 259 Eukaryotic Initiation Factors Gene Family AT3G16380 30.734 1.30e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0120 - - lang:109326572 450.669