Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0114 ATGAACAAAAGCTCCTCCGCCACTACCACTTCATCAGACTCTTCCTCTACAGAGTCCAACCACCCTAGAAACCCAGGCAGGCCCGAAAGGATTAAAGGCCCATGGAGCGCAGAACAAGACCGGGTTCTGACCGGGCTCGTAGAACGGTACGGGCCGAGAAACTGGTCTTTAATCAGTCGCTATATAAAAGGAAGGTCTGGTAAGTCATGCAGGCTACGGTGGTGCAACCAGCTGAGCCCCGCCGTGGAGCACCGTCCCTTCTCAGCCCAAGAGGACGATACCATCATAGCTGCGCATGCCGATTACGGTAACAGGTGGGCCACCATTGCACGGTTACTACCCGGTCGAACAGATAATGCGGTTAAAAACCATTGGAATTCAACTTTGAAGCGAAGAAGCTTAGAGCAACAACAACGACGCGATTCTTTAACTAATTTTGTTGCTACTAATGAGAGATACACAACAACAGGTACACATTCTTCGTTGGGGCTTGTGGTGCCGTTGGAGGATGATCCGTTGACTGCGTTGACTCTTGCTCCACCGGGGATTGATAATGGCGGTGCCGTTGAGGAGACTCAACCGTCGCCGGAAGAGGGTGTCCCTTCGGGGTTTTGGGATATGATGAGAGATGTTATTGCTAGGGAATTGAGGGAATATGTGTCTTCTAATTTTTCTGATAATAGTAATAATAATAATAATAATTCACGTTTTCATTGA 717 0.4854 MNKSSSATTTSSDSSSTESNHPRNPGRPERIKGPWSAEQDRVLTGLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDDTIIAAHADYGNRWATIARLLPGRTDNAVKNHWNSTLKRRSLEQQQRRDSLTNFVATNERYTTTGTHSSLGLVVPLEDDPLTALTLAPPGIDNGGAVEETQPSPEEGVPSGFWDMMRDVIARELREYVSSNFSDNSNNNNNNSRFH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0114 238 PANTHER MYB PROTEIN-RELATED 1 217 - -
Lal4g0114 238 Pfam Myb-like DNA-binding domain 32 78 IPR001005 -
Lal4g0114 238 Pfam Myb-like DNA-binding domain 86 128 IPR001005 -
Lal4g0114 238 MobiDBLite consensus disorder prediction 1 37 - -
Lal4g0114 238 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 217 - -
Lal4g0114 238 ProSiteProfiles Myb-like domain profile. 27 78 IPR001005 -
Lal4g0114 238 CDD SANT 34 76 IPR001005 -
Lal4g0114 238 Gene3D - 86 145 - -
Lal4g0114 238 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Lal4g0114 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 82 IPR017930 -
Lal4g0114 238 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Lal4g0114 238 CDD SANT 86 129 IPR001005 -
Lal4g0114 238 MobiDBLite consensus disorder prediction 1 22 - -
Lal4g0114 238 Gene3D - 31 83 - -
Lal4g0114 238 SMART sant 83 131 IPR001005 -
Lal4g0114 238 SMART sant 31 80 IPR001005 -
Lal4g0114 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 133 IPR017930 -
Lal4g0114 238 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0114 Lal-Chr4 700521 701237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0114 29 133 MYB Transcription Factor Family AT2G23290 76.190 3.64e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal4g0114 Myb_DNA-bind_6 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0114 - - lang:109327990 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0114 4 700521 701237 Lal4g0114 4 700521 701237 ECH
Lal17g0096 17 600397 601074 Lal4g0114 4 700521 701237 LSH
Lal21g0182 21 1183934 1184611 Lal4g0114 4 700521 701237 LSH