Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0108 ATGAAATCATTTTTCATTTCAGGATTCTTGATAGCTCATGAGATGATGCACGCATGGATGAACCTTTCTGGTTATGAACCAAAGAGTGAAGAAGTAGAAGAAGGTATATCTCAGGTTATGGGTCATATGTGGTTGGAGTGTGAGGTCTCTTCAAGGAATGGTAGATGGTCTCATTTTGAAAGGAAGCTTTGGGAGTTCATCAAGTTCCAGGTTGAAGTGAGTCATTGCCCTATTTATGGAGATGGATTTAGGAAAGTTTCTTTGTTCATTGTACGGACTGCAAATCTCACTTTGAAGAATATGAACAACTTGCTAGAGGTATTTTTGGAAATGGAAATATCTATCCACCCGTTCAAACCCATTTCACAACAGAGTCCAGTATATATATCAACTATACTCAGAAAAATGTTGCCTTTAATTCATAGGAATTGTGGTGGTTGCAATACTGAAATTCATTATGGGCGATACCTAACATGCTTTAATGCAAGCTGGCATCCTAAATGTCTCATTTGTCGTGCTTGCAACCAACCAATCTATGATAACGAGTTCTCAATATTTGGCAATTACCCTTATCATAGTTCATGCTATAAGGACTACAACTATCTAAAATGTGATGTCTGCGAGGGTAATGTTATAACAAACTATGCTGGTCATGTTGGATATATGACGCGACCATTCTTTATGCAAAAAATTTGCACTTCTCATATACATGATGGCACACCAATTTGTTTCAGCTGTGAGCGAATGGAGTCAAGGGAGAGAGGAGGATATAGTGATCTTTATGATGGTCGGAAGCTTTGTTTAGAGTGTAAGGACTCTGCTATCATGGATACTAAAGAATGCCAATCTCTTTATATTGAGATACAGAAATTTTATGAAAATCTACATATGAATTTGGACCTCAAAATCCCACTATTGTTGGTTGAAAGACAAGAGCTGATTAAAGTAGTAGAGAGAATTAACAATGGCAACAATGATATTTTTGAGCCTAGAGGAATTTGCCTCTTCTCAGAAAAAGTGACTATAAACACTATAACAAGGGGACCTGAATTTGAGACAGGAAATAGAGCATCAAGCATTAGAACAAAACCCCGAAAACTGACTCGGCGGCCATGTGGTGTAACAGCAATACTCATTGTGTTTGGTTTACCAAGGCTGCTTACTGGATCGATCATAGCGCATGAGATGATGCATGCTTGGCTGCACTCAGATGAAGGTTATCATGGACTAAGTGATGAAGTTGAAGAAGGTATCTGTCAATTTATGGCTCATATGTGGTTAGAGGCTAAAAGACCTCATTATGAGAGCAAGCTTTGGGTTTTCTTCAAGTTCAAGATTGAACAGAATACTATCCCTGCTTATGGAGATGGATTTCGAGCTGCTCGGCAAGCAGTGTACAAGTATGGTCTACACCAGACCCTTCAACATATCAGAACAACAGGGAATTTTCCATTTTGA 1458 0.3855 MKSFFISGFLIAHEMMHAWMNLSGYEPKSEEVEEGISQVMGHMWLECEVSSRNGRWSHFERKLWEFIKFQVEVSHCPIYGDGFRKVSLFIVRTANLTLKNMNNLLEVFLEMEISIHPFKPISQQSPVYISTILRKMLPLIHRNCGGCNTEIHYGRYLTCFNASWHPKCLICRACNQPIYDNEFSIFGNYPYHSSCYKDYNYLKCDVCEGNVITNYAGHVGYMTRPFFMQKICTSHIHDGTPICFSCERMESRERGGYSDLYDGRKLCLECKDSAIMDTKECQSLYIEIQKFYENLHMNLDLKIPLLLVERQELIKVVERINNGNNDIFEPRGICLFSEKVTINTITRGPEFETGNRASSIRTKPRKLTRRPCGVTAILIVFGLPRLLTGSIIAHEMMHAWLHSDEGYHGLSDEVEEGICQFMAHMWLEAKRPHYESKLWVFFKFKIEQNTIPAYGDGFRAARQAVYKYGLHQTLQHIRTTGNFPF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0108 485 Gene3D Cysteine Rich Protein 140 201 - -
Lal4g0108 485 SMART lim_4 143 195 IPR001781 -
Lal4g0108 485 PANTHER PROTEIN DA1-LIKE 141 485 - -
Lal4g0108 485 PANTHER PROTEIN DA1-LIKE 6 88 - -
Lal4g0108 485 ProSiteProfiles LIM domain profile. 142 202 IPR001781 -
Lal4g0108 485 Pfam Protein DA1 7 50 IPR022087 -
Lal4g0108 485 Pfam Protein DA1 431 479 IPR022087 -
Lal4g0108 485 Pfam Protein DA1 295 430 IPR022087 -
Lal4g0108 485 Pfam LIM domain 144 197 IPR001781 -
Lal4g0108 485 CDD LIM_DA1 144 196 - -
Lal4g0108 485 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 169 - -
Lal4g0108 485 CDD LIM 171 246 - -
Lal4g0108 485 ProSitePatterns LIM zinc-binding domain signature. 144 178 IPR001781 -
Lal4g0108 485 PANTHER PROTEIN DA1-RELATED 2 6 88 IPR045218 -
Lal4g0108 485 PANTHER PROTEIN DA1-RELATED 2 141 485 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0108 Lal-Chr4 671402 678790 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal4g0108 DA1-like 3.7e-45 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0108 - - lang:109326885 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0108 4 671402 678790 Lal4g0108 4 671402 678790 ECH