Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0089 ATGTCAAACTCTATTACCCATCAAAACCAATATGAGAACCAAGAGCTAGATGCTTATGGTTCTTCTTTAAGAAACAATAATGCATATCCTGTGGCCTTAGGAGTTTTTCCAAGGAGCATTACATCCATTGGAGACAGAATGTTACTAGCTGAGGGTTCTGAGATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCTGCTAATGAGAGCAATCACCAAACTCAAGGCTTATTATCCCTTTCTTTAGGCTCTCACATGCTTGTCCCTTCTGATGAATACAGGCATAGACCCTTAAATCATGGTCTCATGACCCCAAATTACTTCATGCCTGGCCAAGAAACAAGGGAAGCTTGTAATCCTGCAGTGGAGCATCATCATATAACTAGTGACTATTTTTTCACTAGTGGTGCTAGTTTTGCTACATCTTCCACCTCATTTAACCTTTCCCCTTCTACCTCTTATGGAACTGAGTCCTTTACTGCTGTCATTGCAAACTCAAGGTATCTCAAACCATCACAATCCCTTCTTGAAGATCTTGTTGGTGTTTGTGCAAATGTGGTTGATAGAATGAACGAGAAGTATGTGGCGAAATTGTTTCGTGGTAGTAGAACAGGTGCCAGAAGTCTTTCCACTGAGCTAAAAACAGAGTTGGGTAACATTGGACCATTATCAGCTGAAAAACAAGAACATCAAATGAAAATTGCAAAGTTGATTGCTTTGTTGGATGAGGTAGAGAGCAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTTCAATCCTTTGAAATGATAGCAGGTCTTGGAGCTGCAAAGTGTTACACTGCTATGGCACTTCAAGCCATGTCAAGGCATTTTTGCAGCTTGAGAGATGCTATAGTGTCACAAATAAATGTGGAGAAAAGAAAACTGTTTCAAGATTTGCCTAAAATCAATAGCGGATTATCTCAACTTAGCCTATTTGATAGAGACAATAGACAGGGTAGAATGTCACTCCAACAACTTGGGATTATGCAAAGCCAACGCCAAATATGGAGACCCATCAGAGGGTTGCCTGAAACATCTGTAGTAATTCTCCGCTCTTGGCTTTTCGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAGAAGTTAATGTTGGCATCACAGACAAGTTTAACTAAAAACCAAGTATCAAATTGGTTCATAAATGCTCGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCTTCAGAAGATTCCAATCCACAAGCTAACAACTATTTAACAAGGGAAGAAGATACCACATATTGTGTGGAGGATTGA 1332 0.4002 MSNSITHQNQYENQELDAYGSSLRNNNAYPVALGVFPRSITSIGDRMLLAEGSEMSHTRHLMDLLGAANESNHQTQGLLSLSLGSHMLVPSDEYRHRPLNHGLMTPNYFMPGQETREACNPAVEHHHITSDYFFTSGASFATSSTSFNLSPSTSYGTESFTAVIANSRYLKPSQSLLEDLVGVCANVVDRMNEKYVAKLFRGSRTGARSLSTELKTELGNIGPLSAEKQEHQMKIAKLIALLDEVESRYEKYYHQMEEVVQSFEMIAGLGAAKCYTAMALQAMSRHFCSLRDAIVSQINVEKRKLFQDLPKINSGLSQLSLFDRDNRQGRMSLQQLGIMQSQRQIWRPIRGLPETSVVILRSWLFEHFLHPYPNDSEKLMLASQTSLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPQANNYLTREEDTTYCVED 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0089 443 SUPERFAMILY Homeodomain-like 352 414 IPR009057 -
Lal4g0089 443 Coils Coil 228 262 - -
Lal4g0089 443 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 425 - -
Lal4g0089 443 SMART prehox3 158 296 IPR006563 -
Lal4g0089 443 CDD homeodomain 346 407 IPR001356 GO:0003677
Lal4g0089 443 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 13 425 - -
Lal4g0089 443 Gene3D - 340 421 - -
Lal4g0089 443 ProSiteProfiles 'Homeobox' domain profile. 365 406 IPR001356 GO:0003677
Lal4g0089 443 MobiDBLite consensus disorder prediction 421 435 - -
Lal4g0089 443 SMART HOX_1 346 410 IPR001356 GO:0003677
Lal4g0089 443 Pfam Associated with HOX 163 295 IPR006563 -
Lal4g0089 443 Pfam Homeobox KN domain 363 402 IPR008422 GO:0003677|GO:0006355
Lal4g0089 443 MobiDBLite consensus disorder prediction 415 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0089 Lal-Chr4 541388 545016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0089 160 425 Homeobox Transcription Factor Family AT2G16400 51.111 1.51e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal4g0089 POX 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0089 - - gmx:100792161 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0089 4 541388 545016 Lal4g0089 4 541388 545016 ECH
Lal17g0073 17 448482 457513 Lal4g0089 4 541388 545016 LSH
Lal21g0140 21 971859 975256 Lal4g0089 4 541388 545016 LSH
Lal4g0089 4 541388 545016 Lal25g0542 25 3957838 3963436 PCT
Lal4g0089 4 541388 545016 Lal10g0864 10 16157930 16162433 PCT