Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0083 ATGGCACGAGGTAAGATCCAGATCAAGAGAATAGAGAACACGACGAATCGTCAGGTAACATATTCAAAACGAAGGAATGGGTTATTCAAGAAAGCTAACGAGCTCACTGTTCTGTGTGATGCAAAGGTTTCTATTATTATGTTCTCCAGTACTGGCAAGCTTCATCAGTACATTAGTTCCTCTACCTCCACAAAAGCGTTTTTTGATCAGTACCAGATGACTGTTGGAACTGATCTATGGAAATCCCACTATGAGAATATGCAAGAGGACTTGAAGAAACTTAAAGATGTTAATGGGAATCTTCGCAAGGAGATTAGGCAGAGAGTGGGGGAGTGTCTGGAAGATCTGGGCATTGAAGAACTCACACTTCTTGAGGATGAAATGGACAAGGCTGCTAAGGTTGTTCGAGAGCGTAAGTATAAGGTGATAACAAATCAAATTGACACCCAAAGGAAGAAGATGAATAATGAGAAAGAAGTGCAACGTAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTATGGATTGGTGGAAAATGGAAGGGATTATGATTCAGTGATGGGATTCTCAAATATAGAACCACGCATGTTTGCATTGACCCTACAACCTAGCCATACTAATAATAATGTTCATAGTGGAGCAGGGTCTGATCTTACCACTTACCCTTTACTTTTTTAG 687 0.4105 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHQYISSSTSTKAFFDQYQMTVGTDLWKSHYENMQEDLKKLKDVNGNLRKEIRQRVGECLEDLGIEELTLLEDEMDKAAKVVRERKYKVITNQIDTQRKKMNNEKEVQRRLLRDLDARAEDPRYGLVENGRDYDSVMGFSNIEPRMFALTLQPSHTNNNVHSGAGSDLTTYPLLF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0083 228 PANTHER APETALA3 1 225 - -
Lal4g0083 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal4g0083 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Lal4g0083 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal4g0083 228 Coils Coil 84 104 - -
Lal4g0083 228 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lal4g0083 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal4g0083 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal4g0083 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal4g0083 228 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lal4g0083 228 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal4g0083 228 Coils Coil 151 171 - -
Lal4g0083 228 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Lal4g0083 228 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal4g0083 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal4g0083 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0083 Lal-Chr4 502363 504637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0083 1 227 MADS-box Gene Family AT3G54340 57.143 2.47e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal4g0083 K-box 5.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0083 K09264 - gmx:547720 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0083 4 502363 504637 Lal4g0083 4 502363 504637 ECH
Lal21g0128 21 885945 889538 Lal4g0083 4 502363 504637 LSH