Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0078 ATGGATGATCCTGGGCATCATGAAAATGGAAGGCACAAACCAGATCAATATAAATCTGCTGGACAGTGGTTGATGCAACACCAGCCTTCCATGAAGCAGATTATGTCACTTATGGCTGAAAGAGATGCAGCCATTCAAGAAAGAAGTTTGGCTCTTTCTGAGAAAAAGGCAGCACTTGCAGAGCGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCAGAACGAAATAATGCAATCATGGAACGAGATAACGCAATTGCAGCTCTTCAGTATCGAGAGAGCTCCTTAACCAGCGGTAGCATGTCGTCCTGTCCTCCAGGATGCCAAATCTCACGTGGTGTCAACCATATACATCATCCCCAGCAACAGGTACATCAATTACATAATATGGGTGATACTTCTTACAGCGCACGGGATATGCACACAACTGATGCTCTCCCAGAATCACCCATCCCTTTAGAGGCTGGGAAATCACGACGGGCCAAGCGACCAAAGCAAGCTAAGTCAATTTCACCAAACAAGAAGATTTCAAAAACTGCAAGAAAAGTCAAGATGGAGAGCGGAGACATGAATGACATGATGTTTGGCAAGATGCGCGAATGGAAGAGTGGCCAAGAAATGTTTAATGGAGGTGAGGATCTTAACAAGCAGTCAGTGGTGTCAAAGGCTGATTGGAAAGGCCAGGACTTGGGGTTGAATCAAGTGGCATATGATGAGTCTACCATGCCGGCTCCATTTTGCTCTTGTACCGGTGTTCTGAGGCAGTGCTACAAATGGGGTAATGGGGGTTGGCAGTCTGCTTGTTGCACAACAACCCTGTCAGTTTATCCACTTCCAGCAGTGCCCAACAAGAGGCATGCTCGGGTAGGTGGTCGGAAAATGAGTGGGAGTGCTTTCAATAAGTTGCTTAGTCGGCTTGCTGCAGAAGGTCATGATCTGTCAAACCCTGTTGATCTCAAGGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG 1011 0.4659 MDDPGHHENGRHKPDQYKSAGQWLMQHQPSMKQIMSLMAERDAAIQERSLALSEKKAALAERDMAFLQRDTAIAERNNAIMERDNAIAALQYRESSLTSGSMSSCPPGCQISRGVNHIHHPQQQVHQLHNMGDTSYSARDMHTTDALPESPIPLEAGKSRRAKRPKQAKSISPNKKISKTARKVKMESGDMNDMMFGKMREWKSGQEMFNGGEDLNKQSVVSKADWKGQDLGLNQVAYDESTMPAPFCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0078 336 PANTHER - 1 336 IPR010409 -
Lal4g0078 336 Coils Coil 50 70 - -
Lal4g0078 336 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 336 - -
Lal4g0078 336 SMART GAGA_bind_2 1 336 IPR010409 -
Lal4g0078 336 MobiDBLite consensus disorder prediction 143 183 - -
Lal4g0078 336 Pfam GAGA binding protein-like family 1 336 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0078 Lal-Chr4 462096 465423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0078 64 336 BBR or BPC Transcription factor family AT5G42520 63.668 4.42e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Lal4g0078 GAGA_bind 5.8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0078 - - gmx:100783502 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0078 4 462096 465423 Lal4g0078 4 462096 465423 ECH
Lal17g0066 17 385941 389213 Lal4g0078 4 462096 465423 LSH
Lal21g0124 21 849913 853241 Lal4g0078 4 462096 465423 LSH