Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0076 ATGGGAAAACCTGTCTCTTGCTTCAAACTAATTACATGCGGCGGTGGCGCGTCGGAGACAGATGAATCTCAGGTCAATGATTCCAATGATAAAAGTGGTTGGAGTTTCCGGAAGAAATCTGTAAGGCACCGTGTGCTTAGCAATACTGTGAATGTGGAGGCCCCATCTTCTGCAAATAAGCAAAGTACAGCATGTGATAGTTTTAATTTTCAAGCACTTCCTGAACCTAATGCTGTTGAGAAAGTTTACACAAAACATTCCTCTGAGGAGAAGCCCCAGGTATCCTCCTTGGAAAGCTCACAAATGCCAGAAACAATTTCCATTGAAACTGAGAGTAAGGAGGATGTGAGTCCACCAGAGTCTGCTTTTATTATCATTCAGGCTGCCATCAGAGGGTTATTGGCTCAGAGAGACCTGCTACAGCGTAAGAATGCAGTGAAGTTGCAAGCTGCTATTCGTGGGCACTTGGTACGGAAGCATGCTATAGGAACCCTGCGTTGTGTTCAAGCCATCATCAAAATGCAGGCCCTTGTGCGAGCTCGTCATGCTCAGAAGTACAAAAATGGCAGAAATGACTCCTCAAAAAATTTGTGTAATGAAAATCACATAACCAAATCAAATGTGACATACACTTCCATTGAGAAGCTGCTTAGCAATAGGTTTGCTAGTCAGCTGTTGGAATCAACACCAAAGAGCAAACCTATCCATGTCAAGTGTAACCCTTCTAAAGCTGACTCTGCTTGGAAATGGTTGGAGAGGTGGATGTCTGTATTGTTGAAGGATACTCCAGAGTACAAAAAATCAAGTTCTCTGACAGAGCAATCAGACATAATCGAGGATAGAACTTCAGCATTTCAATTTGAATCAGGAATTTCGTCTAAAGTTTATGTCCAGTCAGCAGACTCGAAGCCTGATGTTGGGGATCCCCTTTTGCCTTCCAGGGATGAAGAGAAGCTGACTAGTTATGATTCAAATAACTCAGGCTTTCAAGAAAGCTTCTCTACACCGTATCTTGTGACAGATAACTTGAAACAGGGTCCTCCTAAAAAGTCAATTACTTATGATGATACTGTAAAATCTGCTGAATTTGATTTCTTCCGAAATGAAAATTTAGCATCAGACTCAACTGTTCCACTAGAGCTTAACTCTCTTCCTGAAAAGCTTGAAATAGATGGCGAGCAGTGCAAGCGATCTATGAAAAGATTTGCTTCTGATCAACTAGAAGCTGAGGGAAAAAAATCTGTAAATGGATCAAGAAAGCTCAGTAATCCTGCATTTATTGCTGCACAATCAAAATTTCAAGAACTTAGTTCAATGACAAATTCAGGTTGGACAAACAGTCTGTCCAATCAAGATGCAACTGTTGTATCACAGGCAGACATCTCTTCTGTCAGTACAGACACTGCATATAGATCAAAAGAGCTGCCATTCGAGAACCTTGCTCCCTATCTTTCACAGGTTGTTGACTCTGAATGTGGTACTGAGCTCTCGATTTCTTCCACTCTTGATTCTCCTGACATATCAGAGACTGGTGCTGTGAAAAGTGAGCGAGATGCCAGAGATTTAGTACAAGGGATTGGTAATCTTGAGAACACAACAAATCATTATGTTGAGACTAATATTCCATGTGTCATTCCTGCTTCAAGTTCAGCTACCTCTGTTTTGGATCATACAGAGATTGTTAATGACATTAGTGGCAATATGGTTCAATCAGTGGTAACTGTGGACTCTGAAGAGCGTGCTATCGGGGCTGAGAAAAATTCACCTGTCCTGCCTAGTGCGCAGGTAGAGTCTTCTCAGCAAGATTTCAGACCATCTCTAGAAGAAGCTTCACCTAGAAGCCATATAACTGGCCCTGAATCACAAGGAACACCTTCGAGTCAGATATCTATCAAACTTAGAGAGGGCAAAATCAGTAAGACTGGATCAAGCAAGAAACGTGGGACCCAGTCAGTGGATAACAAATCCCCTGCAAATGCAAATAATGATAAAAGCTTAAGAGGTAGTATGGAGAAGCTGCCTAAAGATCATCTGAGTGGCAAGAGACGCAGTTCCTTTGGCTCAGTAAAACCTGATCATGTTGATCATGAACCAAGTGATAATATTAGTAACAACAACTCACTTCCCCGTTTCATGCAAGTTACAGAATCTGCTAAGGCCAAGATCAATGCAAATACCTCTCCAAGGTCAAGTCCAGATGTGCATGATGAAGACATCCAACTTAAGAAAAGACATTCCCTACCTGGTGCCACTGGTAGGCAGGTTTCTCCGCGCATCCAACGATCAATGTCTCATGCACAGCAGAGTGCAAAAGGGAATGGTGTGCATCCTCCACAAGATCCTCATCACAGTTTAGGTCTTTGTTATTATATTTGTATTGACATAACGGATTGCCGCTTTGTTTTTATAATATTCCTTTTCAATTTTCTTCACTCTTCTATTCTTTGCCTCCCCAAATTTCAAGCTGCCCAGTTTGGTTGTGACAAGGGTTCGCCTGGGAACATCATGTGTGAAAGTGTTAGGTTATTCTTATCAGAGGATGCTCCTTCATTAGTTGGTTTAAGTTCTCAAGATCATCTTCAAGCAAAGAGATCATTGCAATCACATCCAGGTGGATCAGGTTCTGATGACACTCTACCTCCTGGCTTTGATGAAATTCATGTTTTAACCCCGTTAGAGGTCGATTCGTCCCGAATACCAGTGATTAAATGGATTAATCCACCCAAGATGGTGCTAGATCTAACATGGCAAGTGGTGGCTGGGGAAGAAAGCAAAGAGGTAGAGGATCAACATAAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCCCATCCTCCATTCCTCCAAACCCTGCTATTGCAGTGAATGTTGAAGACTCCCATTCCACCAATGATGGTCAAACTGCTCTGATATCAATTACAGCGATTGAAGACGAAGACGCTGCAGTAGATGCGGTATCTGATTCACAATCTCTTGAATTATCTCCTGGCTTACCAAGAGGTCCAATGCAGTTAGCTGGTGGTGTATTATCCGACGTAGCTGCTGCGTCTGTAGCTTTAACTGATATAATAAAGAGTAATCAGCATGGAAATTTGGTTGACCATGAAGTGCTTAATAATATTCTCAACAACCCAGAAATGATTGAGAAATTGATTAGAGATTATGGAGGTTCTAATAACTTGCAATATGTACATAATCAAGGGTCATCTTCAGTGGCATTTTCGCATTCACATATTCCTAATAATCTCGGAGAAATCAGTATACCTTCAACAATTGGTCTTTCAGCTACTTCTTATCCTCTTTCAACTAGAGGTCAAGTGGAACCTGTTGCTACTCAATGGCTTCCTCGGCCTTCAATGTCTTCAGTTACGGTATCTCCTCCTATTGAAGTCCCATCAACAAAGGATGTGAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGATACACAAGAAGAAACACTTCCGTATTCCAGAACTCGTCAGAACCATCAGCCAGTTACTAACCCTGAGACAGCATACATTTCTAGATCAAGGAATTCAAAACCAAAGGTAATGAAACAGTGTATCTTCTTTAACAGTCCTAGAGGATGTCGAAACGGAGCTAATTGTGCATACCAGCATGGTGCACCATTCCACCCACGAGGCGGCACTGTGTCAAGGATACAAAGTTCAAAGAGAATGAAAATGGATAATGAGATTAGCAGTTAA 3717 0.417 MGKPVSCFKLITCGGGASETDESQVNDSNDKSGWSFRKKSVRHRVLSNTVNVEAPSSANKQSTACDSFNFQALPEPNAVEKVYTKHSSEEKPQVSSLESSQMPETISIETESKEDVSPPESAFIIIQAAIRGLLAQRDLLQRKNAVKLQAAIRGHLVRKHAIGTLRCVQAIIKMQALVRARHAQKYKNGRNDSSKNLCNENHITKSNVTYTSIEKLLSNRFASQLLESTPKSKPIHVKCNPSKADSAWKWLERWMSVLLKDTPEYKKSSSLTEQSDIIEDRTSAFQFESGISSKVYVQSADSKPDVGDPLLPSRDEEKLTSYDSNNSGFQESFSTPYLVTDNLKQGPPKKSITYDDTVKSAEFDFFRNENLASDSTVPLELNSLPEKLEIDGEQCKRSMKRFASDQLEAEGKKSVNGSRKLSNPAFIAAQSKFQELSSMTNSGWTNSLSNQDATVVSQADISSVSTDTAYRSKELPFENLAPYLSQVVDSECGTELSISSTLDSPDISETGAVKSERDARDLVQGIGNLENTTNHYVETNIPCVIPASSSATSVLDHTEIVNDISGNMVQSVVTVDSEERAIGAEKNSPVLPSAQVESSQQDFRPSLEEASPRSHITGPESQGTPSSQISIKLREGKISKTGSSKKRGTQSVDNKSPANANNDKSLRGSMEKLPKDHLSGKRRSSFGSVKPDHVDHEPSDNISNNNSLPRFMQVTESAKAKINANTSPRSSPDVHDEDIQLKKRHSLPGATGRQVSPRIQRSMSHAQQSAKGNGVHPPQDPHHSLGLCYYICIDITDCRFVFIIFLFNFLHSSILCLPKFQAAQFGCDKGSPGNIMCESVRLFLSEDAPSLVGLSSQDHLQAKRSLQSHPGGSGSDDTLPPGFDEIHVLTPLEVDSSRIPVIKWINPPKMVLDLTWQVVAGEESKEVEDQHKREMRVLEAIYPRPSSIPPNPAIAVNVEDSHSTNDGQTALISITAIEDEDAAVDAVSDSQSLELSPGLPRGPMQLAGGVLSDVAAASVALTDIIKSNQHGNLVDHEVLNNILNNPEMIEKLIRDYGGSNNLQYVHNQGSSSVAFSHSHIPNNLGEISIPSTIGLSATSYPLSTRGQVEPVATQWLPRPSMSSVTVSPPIEVPSTKDVNYYKSLIQQHGGDTQEETLPYSRTRQNHQPVTNPETAYISRSRNSKPKVMKQCIFFNSPRGCRNGANCAYQHGAPFHPRGGTVSRIQSSKRMKMDNEISS 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0076 1238 MobiDBLite consensus disorder prediction 93 107 - -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 591 607 - -
Lal4g0076 1238 Gene3D - 120 160 - -
Lal4g0076 1238 ProSiteProfiles IQ motif profile. 141 170 IPR000048 GO:0005515
Lal4g0076 1238 MobiDBLite consensus disorder prediction 298 327 - -
Lal4g0076 1238 PANTHER IQ-DOMAIN 5-RELATED 1 778 - -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 643 666 - -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 668 699 - -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 1217 1238 - -
Lal4g0076 1238 ProSiteProfiles Zinc finger C3H1-type profile. 1185 1213 IPR000571 GO:0046872
Lal4g0076 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 186 IPR027417 -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 85 115 - -
Lal4g0076 1238 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Lal4g0076 1238 MobiDBLite consensus disorder prediction 721 778 - -
Lal4g0076 1238 Pfam Protein of unknown function (DUF4005) 691 766 IPR025064 -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 753 774 - -
Lal4g0076 1238 MobiDBLite consensus disorder prediction 583 708 - -
Lal4g0076 1238 PANTHER PROTEIN IQ-DOMAIN 32 1 778 - -
Lal4g0076 1238 SMART iq_5 141 162 IPR000048 GO:0005515
Lal4g0076 1238 SMART iq_5 118 140 IPR000048 GO:0005515
Lal4g0076 1238 MobiDBLite consensus disorder prediction 615 634 - -
Lal4g0076 1238 Pfam IQ calmodulin-binding motif 121 138 IPR000048 GO:0005515
Lal4g0076 1238 Pfam IQ calmodulin-binding motif 142 160 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0076 Lal-Chr4 442868 452308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0076 98 771 IQD Protein Family AT1G19870 36.957 1.37e-95 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal4g0076 DUF4005 4.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0076 - - gmx:100799424 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0076 4 442868 452308 Lal4g0076 4 442868 452308 ECH
Lal17g0063 17 367222 372757 Lal4g0076 4 442868 452308 LSH