Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0058 ATGTCGCCGGTGGAGAGAAACGTGTGCCATAGTGATGAAGAGGAGCGGCACTACCCTCCCCTACTTGCCTCTCATGAAGACTTGGTGAGAGACCCTAATGTTTTTTGGGACACTCTAAGGCGTTTTCACTTTCTTATGGGTACCAAATTTTTGGTTCCTGTGATCGGAGGGAAGGAACTGGATATGCACGTTCTTTACGTGGAGGTTACTAGGAGAAGTGGCTACGAAAAGGTGGTTAGTGAGAAGAAATGGAGGGAAGTGGGTAGTGTGTTCAACTTTTCATCTACCATCACAAGTGCTTCCTATGTGCTGAGGAAACACTACTTTGCTCTTCTTTACCATTATGAACAAGTTCATTTCTTCAAACTTCAGGGTCCTCTATTCACTCCATTAGCACCAGATGCAGCTTCTGTCACCAACCATTCGTGGAAGCCTGATTTAGCTATTGTTCAATACTCACCTAAGCCCATCAATAAGCATCACAACTCGCATGCTAAAGATGCTTCATTACTTATAGTGGAAGGGGCCATCGATGGAAAATTTGATTGTGGTTATTTAGTGTCTGTGAAAATCGGTGCGGAGGTTCTTAGAGGGGTGCTTTATCATCCAGACTCATCAGCTCCAACTTCACGGGTTCATCAATATGAGAATGGCATTGTGCCATTCAATAACAACAAACCTAGCAGTTGTGTCAGGAGAAGAAAAAACAAAAGAAGGTGGGACCCCAACTACCCAATGGCAAATAGGAGTGGCTACAACTTCTTCTTTGCTGAGAAGCATTACAAGCTCAAAGAGCTTTACCCAAATAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAATAGTCTTAGCTCTGAAAAAAGAATGGTTTACCAGAACATTGGCTTAAAGGACAAAGAAAGGTACAAGAGAGAATTGAAGGAGTACAAAGAGAAAATGGTACAAGCTGGACATCCATAA 966 0.4286 MSPVERNVCHSDEEERHYPPLLASHEDLVRDPNVFWDTLRRFHFLMGTKFLVPVIGGKELDMHVLYVEVTRRSGYEKVVSEKKWREVGSVFNFSSTITSASYVLRKHYFALLYHYEQVHFFKLQGPLFTPLAPDAASVTNHSWKPDLAIVQYSPKPINKHHNSHAKDASLLIVEGAIDGKFDCGYLVSVKIGAEVLRGVLYHPDSSAPTSRVHQYENGIVPFNNNKPSSCVRRRKNKRRWDPNYPMANRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSSEKRMVYQNIGLKDKERYKRELKEYKEKMVQAGHP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0058 321 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Lal4g0058 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 316 - -
Lal4g0058 321 SMART hmgende2 244 313 IPR009071 -
Lal4g0058 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 316 - -
Lal4g0058 321 SMART bright_3 30 121 IPR001606 GO:0003677
Lal4g0058 321 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Lal4g0058 321 SUPERFAMILY HMG-box 242 315 IPR036910 -
Lal4g0058 321 SMART ARID_2 26 116 - -
Lal4g0058 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 245 312 IPR009071 -
Lal4g0058 321 Pfam HMG (high mobility group) box 248 312 IPR009071 -
Lal4g0058 321 Gene3D High mobility group box domain 229 319 IPR036910 -
Lal4g0058 321 CDD HMGB-UBF_HMG-box 248 309 - -
Lal4g0058 321 Gene3D - 21 125 IPR036431 GO:0003677
Lal4g0058 321 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Lal4g0058 321 SUPERFAMILY ARID-like 25 126 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0058 Lal-Chr4 330197 332500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0058 16 315 ARID Transcription Factor Family AT1G76110 60.328 7.52e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal4g0058 ARID 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0058 - - gmx:100784746 449.899