Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0039 ATGAGCTGTTTCTCTTGCCTTTCTTCTCGTCGTAAAGATGTTAGTAGAGTCCAAATTGGCAATCTCTCTCCATCTGATTCTTCTTCAGGAATTGGAGGAGTGAATGTTGCTTATGCTGAGGTTGAAAAGAAGAAGGGAGAGACAAATGGGAAGAATGTGAAAAACAGTAGTGGAGTAGCAGTTAATTTTGGATTTATGGAGCTTGCAGAAGCAACTGGGGGATTTGAAGAAACTAACATGATTGGGGAAGGGGGTTTTGGAAAGGTTGTTGCGATAAAACAGTTAAGTCATGATGGTCATCAAGGTTTTCAGGAATTTTTGACGGAGGTTCTTATGTTAAGCCTGCTACACCATCCTAATCTTGTTAAGTTAATTGGCTCCTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCCCTCGAAGATCATCTCTTTGATCTTAACCGAGGAGAAGAGCCATTAAGTTGGAGTGTTCGAATGAAGATTGCTGCTAGGTCTGCTCGGGGCCTTGAGCATCTCCATTGTAAAGCTGATCCGCCTGTTATTCATCGAGACTTGAAATCAGCGAACATCTTATTAGATAATGAGTTCAACCCCAAACTGTCAGATTTTGGGCTTGCCAAAGTAGGACCTGATGGAGACAAGTCCCATGTTTCAACCAGAGTGATGGGGACATATGGCTACTGTGCGCCAGAGTATGCCATGAGTGGCAAATTAACTCTTAAGTCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGGCGTAGAGCAATTGATGAAAGTAAAAGACCAGGGGAGCAGAACTTAATTACATGGTGTCGTCCATTTTTCAGTGACCAGAGAAAGTTAATACAAATAGTTGACCCTCTTTTGCGTGGAAACTTCCCTGTGAGGTGTTTGCATCAGGCTGTTGCTATAACTACAATGTGTCTCCAGGAGCAACCAAAAGTTCGACCACATATCAGTGATATTGCTGTTGCATTGGAGTACCTAGCCTCTCATAGTAGTACCTCAGATATTCATAGACATGGTTCTCATCCACATATCATAATAATCATGGGAAATTGTTTCAGAAAGGCAAATAATGATGATAAGAAGATTAAGCAAAGGTATCCTAATATCCCCACCAATAATCCACAAACTACTACTCCTTCAGAAAATGGCATCAAAGTTGGAGAAGCGGAAAAGAAAAGAGGGGATGGAAAGAATAATAGGAAAGGCAGTAGTGAAAAGAATGGGAGGGCAAATATGAAAATGTTCACATTGGCAGAGTTGGGAAGTGCGACAAGAAACTTCAGACCAGACACGATGCTAGGAGAAGGTGGTTTTGGTCGTGTTTTCAGAGGATGGATTGATGAGAACACGTTGAAGCCTTCCAAAGTTGGTGTTGGAATCCCTGTTGCAGTTAAGAAGTCTAACCCCGATAGCCTCCAAGGCCTCCATGAATGGCAGTGTGAAGTGAAATTCTTGGGGAAATTCTCTCATCCAAATCTAGTTAAATTAATTGGGTATTGCTGGGAGGAAAATCAATTCTTGCTTGTATATGAATATATGCAAAAGGGCAGCTTGGAAAGCCACCTCTTCAGAAGAGGTGTAGAACCACTGTCTTGGGATACAAGACTGAAGATAGCCATAGGAGCAGCAAAAGGTCTTGCTTTCTTGCACAATTCAGAAAAATCAGTAATCTATAGAGACTTCAAGTCTTCTAACATTTTGCTTGATGAGGACTATAATGCAAAGCTATCAGATTTCGGGTTGGCAACTTTTGGCCCCATAAATGGCGTATCACACGTAACTACAAGGATCATGGGCACCCATGGTTACGCAGCCCCTGAATATCTGGCCACAGGTCATCTGTATGTGAAAAGTGACGTGTATGGATTTGGTGTTGTTCTTCTAGAAATATTAACAGGGTTGATAGCGTTTGACCCAAAGAGACCCACGGGTGAACAGAATTTGGTTGATTGCAAAAAATCATCCCTTACAGATAAAAAGAAACTACAAAGAACAATGGATCCAAGTATGTGTGGAAAGTATTCAATCACATCAACGTTTCAAGTAGCCCAGCTTATACTTAAATGTTTAGATTCTGACCGCAAAAAACGACCTTCTATGGAAGAGGTTTTGCATATCTTAGAGAAGGCCCGAAGCATAAAATACAAGCCCAACATGAAGAAGTTAAAGTCAAAATATCAAACAAGTAACTCACCACAGGAGCTTCCCATTTCCCAGGCATGA 2268 0.414 MSCFSCLSSRRKDVSRVQIGNLSPSDSSSGIGGVNVAYAEVEKKKGETNGKNVKNSSGVAVNFGFMELAEATGGFEETNMIGEGGFGKVVAIKQLSHDGHQGFQEFLTEVLMLSLLHHPNLVKLIGSCTDGDQRLLVYEYMPMGSLEDHLFDLNRGEEPLSWSVRMKIAARSARGLEHLHCKADPPVIHRDLKSANILLDNEFNPKLSDFGLAKVGPDGDKSHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDESKRPGEQNLITWCRPFFSDQRKLIQIVDPLLRGNFPVRCLHQAVAITTMCLQEQPKVRPHISDIAVALEYLASHSSTSDIHRHGSHPHIIIIMGNCFRKANNDDKKIKQRYPNIPTNNPQTTTPSENGIKVGEAEKKRGDGKNNRKGSSEKNGRANMKMFTLAELGSATRNFRPDTMLGEGGFGRVFRGWIDENTLKPSKVGVGIPVAVKKSNPDSLQGLHEWQCEVKFLGKFSHPNLVKLIGYCWEENQFLLVYEYMQKGSLESHLFRRGVEPLSWDTRLKIAIGAAKGLAFLHNSEKSVIYRDFKSSNILLDEDYNAKLSDFGLATFGPINGVSHVTTRIMGTHGYAAPEYLATGHLYVKSDVYGFGVVLLEILTGLIAFDPKRPTGEQNLVDCKKSSLTDKKKLQRTMDPSMCGKYSITSTFQVAQLILKCLDSDRKKRPSMEEVLHILEKARSIKYKPNMKKLKSKYQTSNSPQELPISQA 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0039 755 ProSiteProfiles Protein kinase domain profile. 75 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0039 755 MobiDBLite consensus disorder prediction 400 422 - -
Lal4g0039 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Lal4g0039 755 Gene3D Phosphorylase Kinase; domain 1 426 527 - -
Lal4g0039 755 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 396 744 - -
Lal4g0039 755 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 49 343 - -
Lal4g0039 755 CDD STKc_IRAK 448 724 - -
Lal4g0039 755 SMART serkin_6 75 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0039 755 SMART serkin_6 442 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0039 755 Gene3D Transferase(Phosphotransferase) domain 1 528 747 - -
Lal4g0039 755 Gene3D Transferase(Phosphotransferase) domain 1 141 360 - -
Lal4g0039 755 MobiDBLite consensus disorder prediction 736 755 - -
Lal4g0039 755 CDD STKc_IRAK 81 339 - -
Lal4g0039 755 Gene3D Phosphorylase Kinase; domain 1 35 140 - -
Lal4g0039 755 PANTHER OS01G0588500 PROTEIN-RELATED 396 744 - -
Lal4g0039 755 PANTHER OS01G0588500 PROTEIN-RELATED 49 343 - -
Lal4g0039 755 MobiDBLite consensus disorder prediction 381 398 - -
Lal4g0039 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lal4g0039 755 MobiDBLite consensus disorder prediction 737 755 - -
Lal4g0039 755 ProSitePatterns Protein kinases ATP-binding region signature. 448 481 IPR017441 GO:0005524
Lal4g0039 755 Pfam Protein tyrosine and serine/threonine kinase 446 721 IPR001245 GO:0004672|GO:0006468
Lal4g0039 755 Pfam Protein tyrosine and serine/threonine kinase 89 336 IPR001245 GO:0004672|GO:0006468
Lal4g0039 755 SUPERFAMILY Protein kinase-like (PK-like) 57 339 IPR011009 -
Lal4g0039 755 ProSiteProfiles Protein kinase domain profile. 442 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0039 755 MobiDBLite consensus disorder prediction 378 424 - -
Lal4g0039 755 SUPERFAMILY Protein kinase-like (PK-like) 421 731 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0039 Lal-Chr4 224409 234426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0039 365 722 Glycoside Hydrolase AT3G07070 41.989 2.63e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal4g0039 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0039 - - aprc:113865973 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0039 4 224409 234426 Lal4g0039 4 224409 234426 ECH