Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0033 ATGATGGTTTCAAGCTGGGATGGAAGTGGCAGCCAGTCGGATGATCTTTTTGATAGGTTGCACATTGAACCTATGTACGACGCTTTTGTCTGTCCTCTTACAAAGCAAGTAATGTGCGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAGAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAATTGGTTTGCCCTTTAACTCTCCAGGAACTAAAAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCTGCGCAGCTGGATATGGCTCGTCGCTCATTGAATATGGGGATTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAAAATATCTGCAAAAGAAACCGGTCAAGTAAGCATACTGTCCGCCAAGCAGGCCTTATACCGATGATAGTTGACATGCTGAAGAGTAGCAGCCGTAAGATTCGTTGTACAGCTTTGGAAACCCTTAGAGTTGTGGTAGAGGAAGATGATGAGAATAAGGAAATGTTGGCGAAAGGAGACATTGTGCGTACAGTAGTAAAATTTCTTAACCATGAGCTTTCTAAAGAAAGAGAAGAAGCTGTCTCTTTGCTTTATGAGCTCTCTAAGTCTGAAGCCCTATGTGAGAAGATCGGTTCAATAAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAATTCTGAAGATCTTTCCACTGTTGAAAAGGCTGATAAAACATTAGAGAATCTGGAGAAGTGCGAGAATAATGTGCGGCAGATGGCTGAAAATGGAAAATTGCAGCCCCTTCTGACCCAACTTCTTGAAGGTCCACCAGAAACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGGACAATGATGTTAAAGTCCTTGTTGCTAGAACCGTGGGTTCATCTTTGATCAATATAATGAAAAGTAGTAATATGCAGTCAAGAGAAGCTGCATTGAAGGCACTAAATCAGATATCATGTGAGCCAAGCGCAAAGATTTTAATAGAGGCTGGAATTCTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCTGCACGATTAAAAGAGGTATCTGCTGCAATTCTCGCCAGCGTCGTAAACTCAGGGGAAGACTTCGATTCTATTCCGTTTGGACCTGATCACCAAACTCTGGTCTCAGAGGTCGTAGTTCATAACCTACTCTATCTTATAAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTCGTTGGGCTTACTAATTCTCAAACTACAGTTGTGAGTGTTGTTGCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAGAGATTTACGCATAGCCTCAATAAAACTTCTTCAGAATCTATCACCCCACATGAGTCAGGAACTAGCTGATGCATTACGTGGCTCAGTTGGACAGCTTGGTAGTCTAATTAGAGTCATATCAGAAAATACAGGAATCACTGAAGAACAAGCAGCAGCTGTTGGCCTTCTAGCCGATCTACCCGAGAGGGATTTGGGCCTCACTAGACAGCTGCTAGATGATGGTGCTTTTCAGATGGCCATATCTAGGGTGATTGCCATCAGGAAGGGAGAGATCAGAGGCAGTCGCTTCATGACGCCGTTTCTTGAAGGGCTGCTGAAGATTCTTGCAAGGGTTACATATGTCTTGGGTGATGAACCTGATGCCCTTGCACTCTGCCGTGATCACAATCTTGCTGCACTGTTTATCGAACTGCTTCAGGCCAATGGACTTGATAATGTACAGATGGTTTCCGCTACAGCTCTGGAGAATTTATCGCTACAGTCACAAAATCTAACAAAACTACCCGAGTTGCCATCGCCGGGTGTTTGTGCTTCAATCTTTACATGCTTCGGCAAACAGCAGGTGATAACTGGAACGTGTAGGATCCACCGAGGGATGTGTTCTTTAAAAGAAACATTTTGTCTTTTAGAAGGGCAGGCAGTCCTTAAGTTAATAGCTGTACTGGACCACACAAATGTGAAGGTGGTTGAGGCAGCACTTGCAGCTTTATCTACTTTAATAGAAGATGGTGTGGTTATTGAGCAAGGTGTATTGGTGCTGTGTGAAGCAGAGGGAGTGCAGCCTATACTTGATGTGTTAATTGAGAAAAGGACAGAAAATTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTACTGCGTACCGACGATATAGCATATGTGGTTTCTGGAGCTCAAAATGTGAGTACTGCACTTGTGGATGCTTTTCAGCATGCTGACTATAGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCCAGCTTCTCTGGATTGTTTCCAAATGTGATGACCTCCTAG 2433 0.4394 MMVSSWDGSGSQSDDLFDRLHIEPMYDAFVCPLTKQVMCDPVTLENGQTFEREAIEKWFKECRESGRKLVCPLTLQELKSTELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGIPENETLQALKYVQNICKRNRSSKHTVRQAGLIPMIVDMLKSSSRKIRCTALETLRVVVEEDDENKEMLAKGDIVRTVVKFLNHELSKEREEAVSLLYELSKSEALCEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAENGKLQPLLTQLLEGPPETKLAMAGYLGELVLDNDVKVLVARTVGSSLINIMKSSNMQSREAALKALNQISCEPSAKILIEAGILSPLVNDLFAVGPNQLPARLKEVSAAILASVVNSGEDFDSIPFGPDHQTLVSEVVVHNLLYLISNTGPAIECKLLQVLVGLTNSQTTVVSVVAAIKSSGATISLVQFIEAPQRDLRIASIKLLQNLSPHMSQELADALRGSVGQLGSLIRVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDDGAFQMAISRVIAIRKGEIRGSRFMTPFLEGLLKILARVTYVLGDEPDALALCRDHNLAALFIELLQANGLDNVQMVSATALENLSLQSQNLTKLPELPSPGVCASIFTCFGKQQVITGTCRIHRGMCSLKETFCLLEGQAVLKLIAVLDHTNVKVVEAALAALSTLIEDGVVIEQGVLVLCEAEGVQPILDVLIEKRTENLRRRAVWAVERLLRTDDIAYVVSGAQNVSTALVDAFQHADYRTRQIAERALKHVDKIPSFSGLFPNVMTS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0033 810 CDD RING-Ubox_PUB 29 76 IPR045210 -
Lal4g0033 810 SUPERFAMILY ARM repeat 119 543 IPR016024 -
Lal4g0033 810 SUPERFAMILY ARM repeat 457 796 IPR016024 -
Lal4g0033 810 Gene3D - 568 796 IPR011989 -
Lal4g0033 810 SUPERFAMILY RING/U-box 21 106 - -
Lal4g0033 810 Coils Coil 252 272 - -
Lal4g0033 810 Gene3D - 308 481 IPR011989 -
Lal4g0033 810 ProSiteProfiles U-box domain profile. 24 103 IPR003613 GO:0004842|GO:0016567
Lal4g0033 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 101 IPR013083 -
Lal4g0033 810 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 7 806 - -
Lal4g0033 810 SMART arm_5 135 175 IPR000225 GO:0005515
Lal4g0033 810 SMART arm_5 667 708 IPR000225 GO:0005515
Lal4g0033 810 SMART arm_5 262 302 IPR000225 GO:0005515
Lal4g0033 810 SMART arm_5 342 387 IPR000225 GO:0005515
Lal4g0033 810 SMART arm_5 585 626 IPR000225 GO:0005515
Lal4g0033 810 SMART arm_5 177 217 IPR000225 GO:0005515
Lal4g0033 810 SMART arm_5 713 754 IPR000225 GO:0005515
Lal4g0033 810 SMART Ubox_2 28 96 IPR003613 GO:0004842|GO:0016567
Lal4g0033 810 Pfam U-box domain 27 101 IPR003613 GO:0004842|GO:0016567
Lal4g0033 810 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 806 - -
Lal4g0033 810 Gene3D - 102 285 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0033 Lal-Chr4 185771 190084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0033 5 807 U-box Gene Family AT1G76390 64.268 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0033 - - adu:107460240 1378.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0033 4 185771 190084 Lal4g0033 4 185771 190084 ECH