Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0018 ATGGCATATAGTTCGGGATCGAGTTCAAGTTCGGGGTTTCAACTAATGAACTCACCTTTCGGTGACACAACATACACCAAAGTATTCGTTGGAGGATTGGCTTGGGAGACTCAAAGTGAAACCATGCGCCGCTACTTTCACCAATTCGGTGATATCCTAGAAGCTGTCGTTATCACTGATAAGAATACTGGCCGATCCAAGGGATATGGTTTTGTCACTTTCCGGGATCCCGAGGCTGCTAGTAGGGCTTGTGCTGATTCAGCTCCAACCATAGATGGTCGAAGGGCTAATTGTAATCTCGCTTCCCTTCGTCGACCACACCCTCCTCTGCCTTATGCCTCCCCTTATATTGCAACTATGCAACCAACTCGTGGTGCTTATGTTGGAGGTTATGGCTACCACCAACCACTTCCCCACAACTATCAGCATGGATTGGTTTATCCTCCTTATGGGTATACGGCATATGCACCCGAGTACATCTACCCACAGAGCGTGTACAACCCTTACATGGGTCAGCAATACCTTCAGATATATGGAGTGCCTGGGGCAGTGAACACAACAGTTTATCCTTATGGACAATTGAGTCGGGCTATTCCTAGCAGTCATGGTTATACAGCAATGCCAGGCTATACAGTACCTGGTCATCAGATTGTGCCCTACGGTGGGTCGAATGTTAATGCAATAACAACTTCACATGTGCCTTCCATTCAAGCACCATATCCCAGTGGAATTGCTGCACCTGTTCCAGGACAACCCCAATTTATTGTTCCTGCTCATTCTCAGTTTATGCAAGGTAGTGGTCCTGACCAAACAGACGGTATCCTTAGTTTGCAGCAGGACTATGAGCAGTGGATCTGCTACTTGAGTGGCGGGCTTCTTCAATCTAGCCTTGCAAGTTACTTATTTTGCATTCTAGAGGTCATATGTAGTCATGCTCACCAAGTCGTGTCTGAGTCGCTCATGAAGAAAACTGGAATGTGTGGACTGCTTTTCCATTTGGGCATTTACACTAGTGTATTTATACCTACTACTACTAGTACTTGGGAAGAGTGGCGGTAG 1059 0.4655 MAYSSGSSSSSGFQLMNSPFGDTTYTKVFVGGLAWETQSETMRRYFHQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAASRACADSAPTIDGRRANCNLASLRRPHPPLPYASPYIATMQPTRGAYVGGYGYHQPLPHNYQHGLVYPPYGYTAYAPEYIYPQSVYNPYMGQQYLQIYGVPGAVNTTVYPYGQLSRAIPSSHGYTAMPGYTVPGHQIVPYGGSNVNAITTSHVPSIQAPYPSGIAAPVPGQPQFIVPAHSQFMQGSGPDQTDGILSLQQDYEQWICYLSGGLLQSSLASYLFCILEVICSHAHQVVSESLMKKTGMCGLLFHLGIYTSVFIPTTTSTWEEWR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0018 352 SMART rrm1_1 27 99 IPR000504 GO:0003723
Lal4g0018 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lal4g0018 352 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 4 270 - -
Lal4g0018 352 CDD RRM_RBM24_RBM38_like 26 101 - -
Lal4g0018 352 Gene3D - 21 105 IPR012677 -
Lal4g0018 352 PANTHER BOULE-RELATED 4 270 IPR037366 GO:0003729
Lal4g0018 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Lal4g0018 352 SUPERFAMILY RNA-binding domain, RBD 25 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0018 Lal-Chr4 123291 127980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0018 15 104 C2H2 Transcription Factor Family AT2G19380 36.667 9.37e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0018 - - aprc:113864528 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0018 4 123291 127980 Lal4g0018 4 123291 127980 ECH