Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0010 ATGGATGACTCAAATTCATTGGTGGCTCGTTGTATAGCACCCGTCACTAAGGATTTCCTTCGTCCTCCTCCCCCTCCTCGTAACAATAACGACAACGATGACGGTTACCATAAGAGTCGTATAAATGATAAAAAGTCAAAACGACAACAGAAACGTGAACGCCGTGAGGAACAAAAGTCAGCAACAAACCTGTGTCCTGTAGTTGGAAAAACAGGAGATGTTACTTCATGTGTTTACAAAGATAAATGTCGATTCAGCCATGATATTGATGCATTCAATGCTCAGAAACCTCCTGATCTACAAGGGGATTGTCCTTTCTTCAATACACAAGCCTATTGTCCTTATGGCTTGGTATGTAGATTTTCATCTACTCATCATCAACATACTACTACTACTACTACTCTTAACAAAACTTCTGAAGTCAATGCTTTGACCAAAAATATTCAGAAGCTTTTGTGGAAAAATAAGATCACTTTCCCCAAGGCTGATGCCAAACTCATAACTCTCGGCCTCAAGGTAATGTCTAAGTCAAAAAGCAATCACTTGGAAAATAAAGATGGCGCCAACACTGCTCTCAATAAAAATAATCCTTCCCATGACAATGCCTCTCATCAACTTACCTCTGACTCAGGTTCTAACTTAGAACAAGTAATAAAGGACGATGACATAGATGAAAAATTTGAGTCTCATGTACTCTGCCCTCAAAAGAGAAGAAAAACTTCTGAAAATGAAGGTGTGAGTGTTAATGATGAAATCGTCGAAAGAAGCTGCATAGAAGCTGAACCTGAAGCTGAATCTGTTTCTGTCGCCACAGAAGCAGGTGTGGGTGTTACCGAGGAAATTGATGATAGAAACTGCATCAAAGCTGATCCTGAAGAACAAACTGATACCATTACAACAGAAACAGGCGTGAGTGATGCTGAAGAAATTGTTCAAGGAAGCTATATAAAACCTGAACCTGAAGCAGGAACAGATACTATCCCCACAGAAACAGGTGTACGTGTTACTGAGGAAAGTGTTGAGAGAAGCTGCGTAAAATCAGAAACTGATACCATCACCCCTGAAACAGATCTAAGCTTGAAGTTGCATCCACGTGAAAAGAAGAAGCTTATTGATTTCAAGGATAAGTTGTATCTTGCACCCTTGACCACTGTTGGGAATCTCCCTTTCAGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAGTGGGCATTGTTGAGACGTCATGAGTCTGAAGACTTATTTGGTGTACAAATATGTGGGGCTTTTCCCGATACTGTTGCACGAGCAGTTGAGCTAATAGAGCAGGAATGTACAATAGATTTTATCGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATGAAAAGTATTGTAGAAGTAGCTTCTGGCACAGTGGATAAACCAATAACTGTCAAGGTACGAACAGCTTATTTTGAAGGGAAGAATCGCATTGATTCTCTTATTTGTGACATGAGCTCTTGGGGAGCGAGTGTAGTAACAATACATGGTAGATCACGCCAACAACGTTATAGCAAGCTTGCTGACTGGGACTACATATACCAATGTGTAAAGAAGGCTCCTAATACCTTGCAAGTAGTGGGGAATGGAGATGTTCTTTCATTTGTTGATTGGAACAATCACAGAACTAAAGCCCCTGAACTTGCTACATGCATGATTGCTCGTGGTGCACTGATTAAACCTTGGTTATTTACGGAAATCAAGGAACAAAGGCATTGGGACATCAGTTCTGGGGAGCGGCTCAATATTCTAAAAGATTTCGTGCACTTTGGCCTTCAACACTGGGGTTCTGACACGAAAGGAGTGGAAACAACTAGGCGATTTTTGTTGGAATGGCTTAGCTATACTTGCAGATACATCCCTGTTGGTCTTTTAGATGTGGTTCCACAAAGAATGAACTGGCGTCCACCGTCTTACTATGGCCGTGATGATCTTGAGACATTGATGGCCTCAGACTCTGCTGCTGACTGGTCATCAGAAAATAGTTTTGTTAGATTGCATGATATGAAAGATGAAGATGGAGCAATAACACCCCAAGCCCTAGTACGGATATCAGAGATGTTACTTGGGAAGGTTCCGGATGGCTTTACATTTGCACCAAAGCATAAATCAAATGCCTATGATAGAGCTGAAAATGGTTGA 2259 0.4117 MDDSNSLVARCIAPVTKDFLRPPPPPRNNNDNDDGYHKSRINDKKSKRQQKRERREEQKSATNLCPVVGKTGDVTSCVYKDKCRFSHDIDAFNAQKPPDLQGDCPFFNTQAYCPYGLVCRFSSTHHQHTTTTTTLNKTSEVNALTKNIQKLLWKNKITFPKADAKLITLGLKVMSKSKSNHLENKDGANTALNKNNPSHDNASHQLTSDSGSNLEQVIKDDDIDEKFESHVLCPQKRRKTSENEGVSVNDEIVERSCIEAEPEAESVSVATEAGVGVTEEIDDRNCIKADPEEQTDTITTETGVSDAEEIVQGSYIKPEPEAGTDTIPTETGVRVTEESVERSCVKSETDTITPETDLSLKLHPREKKKLIDFKDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHESEDLFGVQICGAFPDTVARAVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVDKPITVKVRTAYFEGKNRIDSLICDMSSWGASVVTIHGRSRQQRYSKLADWDYIYQCVKKAPNTLQVVGNGDVLSFVDWNNHRTKAPELATCMIARGALIKPWLFTEIKEQRHWDISSGERLNILKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRMNWRPPSYYGRDDLETLMASDSAADWSSENSFVRLHDMKDEDGAITPQALVRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0010 752 MobiDBLite consensus disorder prediction 14 61 - -
Lal4g0010 752 Coils Coil 41 61 - -
Lal4g0010 752 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 6 752 - -
Lal4g0010 752 SUPERFAMILY FMN-linked oxidoreductases 376 689 - -
Lal4g0010 752 ProSiteProfiles Zinc finger C3H1-type profile. 59 90 IPR000571 GO:0046872
Lal4g0010 752 ProSitePatterns Uncharacterized protein family UPF0034 signature. 460 478 IPR018517 GO:0008033|GO:0017150|GO:0050660
Lal4g0010 752 MobiDBLite consensus disorder prediction 180 211 - -
Lal4g0010 752 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 6 752 - -
Lal4g0010 752 CDD DUS_like_FMN 376 611 IPR035587 -
Lal4g0010 752 MobiDBLite consensus disorder prediction 184 211 - -
Lal4g0010 752 Gene3D - 54 140 - -
Lal4g0010 752 Gene3D Aldolase class I 371 614 IPR013785 -
Lal4g0010 752 ProSiteProfiles Zinc finger C3H1-type profile. 98 128 IPR000571 GO:0046872
Lal4g0010 752 Pfam Dihydrouridine synthase (Dus) 379 614 IPR035587 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal4g0010 Dus 1.4e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0010 K05544 - gmx:100783494 885.945