Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1578 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACTGAAGATGAAATATTGAAAGCAGCTGTTATGAAATATGGAAAAAATCAATGGGCTCGAATCTCTTCCCTCCTTGTTCGTAAATCTGCTAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGATCCTTCCATTAAAAAGACTGAATGGACAAGAGAAGAGGATGAGAAACTCCTTCATCTTGCTAAGCTGATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGCCGTACACCATCACAGTGCCTTGAGCGTTACGAGAAACTCCTTGATGCAGCCTGTGTTAAGGATGATAATTATGAACCTGGTGATGACCCACGCAAATTGCGTCCAGGTGAGATTGACCCAAACCCTGAGTCTAAGCCTGCAAGGCCCGATCCCGTTGACATGGACGAGGATGAGAAGGAGATGCTTTCCGAAGCACGAGCTAGGTTAGCCAATACCAAAGGAAAGAAGGCCAAAAGGAAAGCCAGGGAGAAGCAGCTTGAAGAAGCCAGGAGACTTGCTTCTTTGCAGAAAAAGAGAGAACTTAAGGCTGCTGGAATGGATATCAGGCAGCGCAGGAGGAAAAGGAAAGGTATAGACTATAATGCCGAAATTCCATTTGAAAAGAGACCTCCTCCTGGGTTTTTCGATGTTGCTGATGAGGATAGACCCATTGAACAACCTAATTTCCCTACTACAATTCAGGAACTTGAAGGAAAAAGAAGGGTTGACGTTGAAGCACAATTAAGAAAGCAAGACATTGCAAAGAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCTATTTTGCATGCTAACAAAATGAACGACCCAGAAACGGTTAGGAAGAGATCAAAACTGATGCTTCCGCCACCCCAGATATCTGACCATGAATTGGATGAAATTGCAAAGCTGGGTTATGCCAGTGACCAAGCAGGGATTGAGGAACTTGGAGAAGGTAGTAGTGCTACACGTGCTCTTCTGGCTAATTATGCACAGACACCCGGCCAAGGAATGACTCCTTTAAGAACCCCTCAGAGAACACCGGCTGGTAAGGGAGATGCTATCATGATGGAAGCTGAAAACCTGGCTAGGTTGAGAGAGTCTCAGACGCCATTGCTAGGAGGAGAGAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCCAAGAGAAAGGAAATTCAGACTCCAAACCCGGTGCTGACTCCCTCTGCAACTCCTGGAGGGACACCAAGCCTTACTCCTAGAAGTGGTATGACACCGGCAAAGGATGGTTTTTCTTTTGGCATGACTCCGAAGGGAACTCCTCTCAGGGATGAGCTACATATTAATGAGGACATGGATATGAATGACAGTGCTAAGCTGGAGCTACGAAGACAAGCTGATCTGAGAAGAAGTTTGCGCTCTAGTTTAAGCAGCATTCCACAGCCCAAAAATGAGTACCAGGTAGTGATGCAACCGGTTCCAGAAGATGCTGAAGAATCTGAGGAGAAGATTGAAGAGGACATGTCTGATAGAGTAGCTAGAGAAAAGGCGGAAGAAGAGGCACGGCTGACGGCACTACTTCAAAAACGATCAAAAGTCCTTCAAAGGGGACTTCCCAGGCCTCCATCTGCATCTTTGGATCTCATAAAAAACTCCTGGATGCGAGCCGATGAGGACAAGAGTTCCTTTGTTCCACCAACCACAATTGAGCAAGCTGATGAGCTGATAAGAAAGGAGCTTCTAACATTACTGGAGCATGACAATGCTAAGTACCCACTTGATGAAAATAAAGAGAAAAAGAAAGGAGCCAAGCGTTCAGCGAACGTGCGTGTTGTCCCTGTTATAGAAGATTTTCAGGAATATGAGATGAAAGATGCTGATCAGTTAATAAAGGAGGAGGCCAAGTATCTTTGTGGGGCAATGGGGCATGAGAGTGAATCCCTTGATAAATTTGTTGAAGCACATACAACTTGCATTAATGATCTTATGTACTTTGCCAACCGTAATGCCTATGGTCTATCCAGTGTTGCTGGAAACATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGCAGCAAGTTGGACGATGGTAAGGAGAAGGTAGTACGCCTTGAGAAGAAGGTGATGGTACTCACACAAGGCTATGAGAGGCAAAGGGAGGCCAAGAAAAGTCATAGACGGGCCCCGATTAAGAAAGATTTAGAGATGTATACAAGGGCAAAGAAAAGTCTTTGGCCACAAATTGAGGCCACTTTCAAGCAGATGGATGTAGCGGCAACAGAATTGGAGTGCTTCGAAGCTTTACAAAAGCAAGAGCAATTAGCAGCATCCCACAGGATAAACAATGTGTGGGGTGAAGTACAAAAGCAAAAGGAACTTGAGAAAATTCTACAAAAGAGATATGGAGATCTTGTAGTTGAGCTTGAAGGGGTACAAAATGTCATGAACCAGTACAGGGTAAAATCACAAGAAGAAGAAATCAAAGCAAAGAATCGCGAGATTGAGTCTACTGAGGACACAGTTGAAGTTAATGTTCTGGGTACCGAGAATGGAAGTGCCATATCGGTTTATCCATCTCATGATGAAACAACTGACCAACAAGTAGACATTGTGCAAGATCAAGCCACCTCCACCTTCAAAGTTAATGATATGAATGTGGAGTCTTCTAAAGAGCAAACGACACACGACACTGATGTTAAATTGCGAGATGCTGCAGAGGATGACGTTGCAAATGTGGTAGAAGGTGATGAAACCGACAGCTGTGTTGACAACAGAGAGACCACAGTAGATATGAGTGCTTCAGTGGATGTAAGTAGTATGGAAGGAAATAAGGAAGATGAAGATGTTGAGAATCTAGATGAGGCTGTGAACCATGGTGATAACTAG 2910 0.4443 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGMDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPIEQPNFPTTIQELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKMNDPETVRKRSKLMLPPPQISDHELDEIAKLGYASDQAGIEELGEGSSATRALLANYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNPVLTPSATPGGTPSLTPRSGMTPAKDGFSFGMTPKGTPLRDELHINEDMDMNDSAKLELRRQADLRRSLRSSLSSIPQPKNEYQVVMQPVPEDAEESEEKIEEDMSDRVAREKAEEEARLTALLQKRSKVLQRGLPRPPSASLDLIKNSWMRADEDKSSFVPPTTIEQADELIRKELLTLLEHDNAKYPLDENKEKKKGAKRSANVRVVPVIEDFQEYEMKDADQLIKEEAKYLCGAMGHESESLDKFVEAHTTCINDLMYFANRNAYGLSSVAGNMEKLAALQNEFENVSSKLDDGKEKVVRLEKKVMVLTQGYERQREAKKSHRRAPIKKDLEMYTRAKKSLWPQIEATFKQMDVAATELECFEALQKQEQLAASHRINNVWGEVQKQKELEKILQKRYGDLVVELEGVQNVMNQYRVKSQEEEIKAKNREIESTEDTVEVNVLGTENGSAISVYPSHDETTDQQVDIVQDQATSTFKVNDMNVESSKEQTTHDTDVKLRDAAEDDVANVVEGDETDSCVDNRETTVDMSASVDVSSMEGNKEDEDVENLDEAVNHGDN 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1578 969 CDD SANT_CDC5_II 55 106 - -
Lal3g1578 969 Coils Coil 688 715 - -
Lal3g1578 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lal3g1578 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lal3g1578 969 Coils Coil 828 848 - -
Lal3g1578 969 MobiDBLite consensus disorder prediction 935 969 - -
Lal3g1578 969 Coils Coil 167 187 - -
Lal3g1578 969 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lal3g1578 969 SMART sant 6 55 IPR001005 -
Lal3g1578 969 SMART sant 58 105 IPR001005 -
Lal3g1578 969 MobiDBLite consensus disorder prediction 110 150 - -
Lal3g1578 969 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 909 - -
Lal3g1578 969 PANTHER - 1 909 - -
Lal3g1578 969 Pfam Myb-like DNA-binding domain 10 70 - -
Lal3g1578 969 Coils Coil 514 534 - -
Lal3g1578 969 Gene3D - 59 114 - -
Lal3g1578 969 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lal3g1578 969 Gene3D - 5 58 - -
Lal3g1578 969 CDD SANT 10 53 IPR001005 -
Lal3g1578 969 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Lal3g1578 969 MobiDBLite consensus disorder prediction 399 427 - -
Lal3g1578 969 MobiDBLite consensus disorder prediction 380 448 - -
Lal3g1578 969 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1578 Lal-Chr3 21516283 21522090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1578 1 830 MYB-Related Transcription Factor Family AT1G09770 73.109 0.0 1195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g1578 Myb_Cef 3.5e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1578 K12860 - gmx:100801352 1395.18