Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1572 ATGAGTTGCTTTCCGTGTTTTTCCTCTAATAAGGATAAGAATAGCGATAGCTTCAAGAAGGAACAAGGGGGCCCTATACCACAAGAAAATATTATAACAAGAACACCAGTAGATATAAAGAAACCAAAAGAGGAACCAAACCAAGTTGATCCTTCAAATATTGAAGCACAAAATTTCACATTTCGTGAACTAGCAACTGCAACAAAGAATTTCCGGCAAGAATGCCTTATGGGTGAAGGTGGCTTTGGAAGAGTCTACAAAGGCGCAATTCCTGCTACCGGACAGGTGGTAGCTGTGAAGCAACTCGACCGAAATGGAATGCAAGGAGGTAGCAAGGAATTTCTTGTTGAGGTTTTGATGTTAAGTCTGTTGCACCATGAGAATCTTGTGAAACTTGTTGGTTATTGTGCTGATGGAGATCAACGTCTTTTGGTTTATGAGTTCTTGCCAGGGGGCTCTCTCGAACACTGTCTTTTTGAGAGTAGACAAGATGAAGCACCATTAGATTGGTATAGCAGAATGAAAGTAGCATCTAGTGCTGCAAAAGGACTATGGTACTTGCATGACAAGGCTAATCCACCAGTTATATACAGGGACTTGAAATCTTCAAACATCTTACTTGATAATGAATTTAATGCAAAATTATCAGATTATGGATTAGCCAAACTTGCTGGTAAAGATAAGATGAATATTGTACCTACAAGAGTTATGGGTACCTATGGTTACAGTGCTCCTGAGTATGTGAGAACAGGTAACCTCACCTTGAAATCAGATGTCTATAGTTTTGGAGTTGTCTTGCTAGAGCTTATAACTGGAAGAAAAGCTGTTGACACCACAAGACCAAATGATGAGCAAAATCTGGTTTCATGGGCACAACCTATATTCAGGGACCCAAAAAGATATGGAGATATAGCAGATCCACTTCTGAATAAAAATTACCCAGACAAGGATCTTAATCAAGTTGTTGCAATAGCAGCAATGTGCTTACAAGAAGAATCAGCAGCAAGACCTTTGATGAGTGATGTTGTAACTGCTCTAAGCTTTCTTTCAACTTCTCCTCCAGAAAACAATGTTGTTCATGCTCCTGAAATTCCTCTTGATAGTAAAAATGAAAGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCTGTTAAGAGCAACAGCGATGGTTCTACTTCTGATGAAGAAGATGGTTCTTATCACAACAAGGATAAAAGTAGTGATGATGAAACTGCTAAAGAAAAGGTTTCAGCTAGTGCAAAATACCAAGAAAGTGATGCGTCAGATGGTGAAGATGATTATTATCAGAATGAAGACCAACGTGATTATAGTCCTCAAGACACAAAGGATGAGTATTACTCGAAACCAAGCCGAAAATGCAGCACAAAATCAAAGAATGCAATAAATTCTTCTGGCCGCAAAAACAGCACAAGATCAAAGAATGCAACAAATTCTTCTGGCCGCAGAAGAAGCAGCGTTAGTAGTTCAGATTCAGAAGATGGAATAAGCAAGCCAACAAGCCACAAAAGCAGTATAAAATCATCAAATGGTGTTGCAAATGGTAATATAAGCAAGAAGAGCAGCACAAAAACTTGTTTGAGTGAAAACAAGAGTAAAAAATCTGTGAGAGTTTTAAGCCACAAGACAAGTAGTGGCAGTGAAGAGTCACATGATGATGGAGATGCGGTTTTCGACCGTAGTGAAAGTAGGCCTTCACAAGGGAACATGTCTTCTGGCCTTTTCAGCATTGATCAAAGTGTTCACTCAGATTATCATTACAGCATGGATAGAAGGTCCGAGGAGGGGAGCAACCATACAAGTAGCAGTGGATCAGATCAGGAATAA 1845 0.3935 MSCFPCFSSNKDKNSDSFKKEQGGPIPQENIITRTPVDIKKPKEEPNQVDPSNIEAQNFTFRELATATKNFRQECLMGEGGFGRVYKGAIPATGQVVAVKQLDRNGMQGGSKEFLVEVLMLSLLHHENLVKLVGYCADGDQRLLVYEFLPGGSLEHCLFESRQDEAPLDWYSRMKVASSAAKGLWYLHDKANPPVIYRDLKSSNILLDNEFNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRKAVDTTRPNDEQNLVSWAQPIFRDPKRYGDIADPLLNKNYPDKDLNQVVAIAAMCLQEESAARPLMSDVVTALSFLSTSPPENNVVHAPEIPLDSKNESEEEEEEEEEESVKSNSDGSTSDEEDGSYHNKDKSSDDETAKEKVSASAKYQESDASDGEDDYYQNEDQRDYSPQDTKDEYYSKPSRKCSTKSKNAINSSGRKNSTRSKNATNSSGRRRSSVSSSDSEDGISKPTSHKSSIKSSNGVANGNISKKSSTKTCLSENKSKKSVRVLSHKTSSGSEESHDDGDAVFDRSESRPSQGNMSSGLFSIDQSVHSDYHYSMDRRSEEGSNHTSSSGSDQE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1572 614 Gene3D Transferase(Phosphotransferase) domain 1 149 352 - -
Lal3g1572 614 MobiDBLite consensus disorder prediction 568 589 - -
Lal3g1572 614 PANTHER RECEPTOR KINASE-LIKE PROTEIN 1 601 - -
Lal3g1572 614 MobiDBLite consensus disorder prediction 437 458 - -
Lal3g1572 614 CDD STKc_IRAK 77 346 - -
Lal3g1572 614 SUPERFAMILY Protein kinase-like (PK-like) 49 350 IPR011009 -
Lal3g1572 614 MobiDBLite consensus disorder prediction 1 51 - -
Lal3g1572 614 Coils Coil 369 389 - -
Lal3g1572 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lal3g1572 614 MobiDBLite consensus disorder prediction 459 531 - -
Lal3g1572 614 Gene3D Phosphorylase Kinase; domain 1 39 148 - -
Lal3g1572 614 ProSiteProfiles Protein kinase domain profile. 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1572 614 PANTHER OS07G0668900 PROTEIN 1 601 - -
Lal3g1572 614 MobiDBLite consensus disorder prediction 385 428 - -
Lal3g1572 614 MobiDBLite consensus disorder prediction 351 614 - -
Lal3g1572 614 SMART serkin_6 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1572 614 MobiDBLite consensus disorder prediction 369 384 - -
Lal3g1572 614 MobiDBLite consensus disorder prediction 550 566 - -
Lal3g1572 614 Pfam Protein kinase domain 73 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1572 Lal-Chr3 21480062 21483150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1572 1 353 Glycoside Hydrolase AT3G07070 63.536 5.81e-162 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal3g1572 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1572 - - gmx:100807682 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1572 3 21480062 21483150 Lal18g0259 18 2162201 2164820 LSH