Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1549 ATGAAGATGTTATGGAGTGAAAACGAAAAAGCCAGGGTTGCTGGTGTTCTAGGACCAAAAGCTTTGAATTTTTTTATTTCAAATTCATTGCCCAATGAGATTGTCTTAATGGCTGTTGGCAGTGATGTGAGTCTTCAGAACAAGCTCTCTGATCTTGTTGAGAGACCCAATGTTTCAAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCTCAGTCAAAATCTGGTGATTCAGTTCTTGATGCAACTAAGTTTGAGGAAGAAGGTGCTTCAGATGAGGAGAACTATGTTATTAGTCTTGACCATGTTACTGACACAGAGATGTTTTTTCTTGCTTCCATGTACTTCTCTTTCCCTAAGGGAAGTGGTGGACCAGTGCCAACTGATTTGGGAGTTGTGGAGTTAGGTTCTGTGAGATTGTTGCCTGAGAACTTTGAATTGTTAGAAGCTATAAAAACTGTGTTTTCATCATTATATTCATACCCTAAGGTTAATGTTAAGCCAATTTCACCTTTACCATTGACTATTGTTACTGAAAAGAGAGATGGGAAAAATGATGTATTTCATGGTTTTCCAATTGGAGATGAAGTTTCAAAGGTTTTTGTGAACCCCGGTCCAGGTCACACTCATTTTAGGGAGAAACTTGCTATTCGGAAAGTGGAGGAGAGGCCACGGGGAGACTGCGGCCACCCCAATGGGAATGGTATTAAGTTCCCTAATGCTGCTCATAGAAATGGTCTCCATGGGTCAAGTTGGGCAGGGAATCAAGGTATGATGAGGCAGCCTAGTCAGGCCGAAGTTTACCCTAATAGAAGCGATGTCACGGTAGCGGAGGCAGGTAATGGCGTGAGACAAGATTTTAGGCTCAACAACTATCAACCTCAAAGTCAAATGCAAATTGATTTCCCAGGAGCTACTTCGAGGCCTTTAATGAGACCGGTTGTTGGTGAATTAGAATTGTCTGATGCTGAGGCCTCTTTCAAGGAGGAGCAGCTGGGCGTAATCGATGAAAGGAAGCCCAAGAAACGTGGCAGGAAACCTGTGAATGGAAGGGATGAACCACTAAATCATGTGGAGGCAGAGAGGCAAAGGCGCGAGAAGCTGAACCAGCGTTTCTATGCATTAAGGTCTGTTGTTCCTAATGTATCTAAGATGGACAAGGCATCATTGTTAGGTGATGCCATTGCTTACATTAATGAGCTTCAGGAAAAACTCAAGATGTTGGAAAAGTTTGAGAAAGAGAAATTTGGCAGCACTACAAGGGATGGATATGGATCGGAAAATCATCAGAGTCGAACTCCCGGTGTGGATATTGAAGCTTCTCAAGACGAAGTAACTGTAAGGATGAGTTGCCCTCTTGATACTCATCCTGTTTCAAAAGTAATCCAAGCATTCAAAACTGCTGAAATCAGTGTAGTAGAGTCAAAACTCGCTGCTGCGAACGATACCATCTTCCATACATTTGTAATTAAATCCAAAGGGTATGAACAGATTATAAAGGACAAGTTGATTGCAACATAG 1524 0.4199 MKMLWSENEKARVAGVLGPKALNFFISNSLPNEIVLMAVGSDVSLQNKLSDLVERPNVSNFSWNYAIFWQLSQSKSGDSVLDATKFEEEGASDEENYVISLDHVTDTEMFFLASMYFSFPKGSGGPVPTDLGVVELGSVRLLPENFELLEAIKTVFSSLYSYPKVNVKPISPLPLTIVTEKRDGKNDVFHGFPIGDEVSKVFVNPGPGHTHFREKLAIRKVEERPRGDCGHPNGNGIKFPNAAHRNGLHGSSWAGNQGMMRQPSQAEVYPNRSDVTVAEAGNGVRQDFRLNNYQPQSQMQIDFPGATSRPLMRPVVGELELSDAEASFKEEQLGVIDERKPKKRGRKPVNGRDEPLNHVEAERQRREKLNQRFYALRSVVPNVSKMDKASLLGDAIAYINELQEKLKMLEKFEKEKFGSTTRDGYGSENHQSRTPGVDIEASQDEVTVRMSCPLDTHPVSKVIQAFKTAEISVVESKLAAANDTIFHTFVIKSKGYEQIIKDKLIAT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1549 507 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 4 81 - -
Lal3g1549 507 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 90 126 - -
Lal3g1549 507 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 127 506 - -
Lal3g1549 507 SMART finulus 359 408 IPR011598 GO:0046983
Lal3g1549 507 Coils Coil 395 415 - -
Lal3g1549 507 PANTHER MYC 127 506 IPR045084 GO:0003700|GO:0006355
Lal3g1549 507 PANTHER MYC 4 81 IPR045084 GO:0003700|GO:0006355
Lal3g1549 507 PANTHER MYC 90 126 IPR045084 GO:0003700|GO:0006355
Lal3g1549 507 Gene3D - 349 416 IPR036638 GO:0046983
Lal3g1549 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 413 IPR036638 GO:0046983
Lal3g1549 507 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Lal3g1549 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Lal3g1549 507 CDD bHLH_AtAIB_like 350 416 - -
Lal3g1549 507 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 126 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1549 Lal-Chr3 21251299 21253033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1549 2 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 40.067 3.35e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal3g1549 bHLH-MYC_N 5.2e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1549 - - adu:107491937 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1549 3 21251299 21253033 Lal3g1549 3 21251299 21253033 ECH
Lal3g1549 3 21251299 21253033 Lal6g0634 6 4133429 4135727 PCT
Lal3g1549 3 21251299 21253033 Lal18g1039 18 13383912 13386162 PCT
Lal6g0634 6 4133429 4135727 Lal3g1549 3 21251299 21253033 PCT
Lal18g1039 18 13383912 13386162 Lal3g1549 3 21251299 21253033 PCT