Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1548 ATGGAGCATCAACCACCAACCACCACCACCACTGAAAAATCTCACACCCTCAAAATCGGTACGCGCCACCCTTTATATCGCGGCGTGCGGAAGCGGCGATGGGGAAAATGGGTTTCTGAAATCCGTGAACCTCGTAAGAAATCACGCATATGGCTCGGTTCCTTCCCACTTCCAGAGATGGCAGCAAAAGCATACGACGTCGCTGCATATTCCTTAAAAGGCCGTAAAGCTCAGCTCAACTTTCCCGACGAGGTACAATGCCTTCCACTTCCGGCCACTTCTTCACCCAGAGACATTCAGGCTGCGGCTGCCAAGGCGGCGAATATGATTAACAAAGACAAGAGTTGCGACGGTGATAGCGGTGGTGGTGATTTTTGGGGTGAAATTGAGTTGCCGGAGCTGGGTAATGGTGAATGTTGCTTTGGTTATTCTTCTTCTTCTCCGAGTGGGTCGACGTCATGGGTTTCCTCCGGTGGCGGTGATATGGCGGTGTGGTCATCGGAGGTTGAGATTTTGCAGCAGCAACCGTTCATGTTCATGGCGTGTCTTTAA 552 0.5145 MEHQPPTTTTTEKSHTLKIGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPLPEMAAKAYDVAAYSLKGRKAQLNFPDEVQCLPLPATSSPRDIQAAAAKAANMINKDKSCDGDSGGGDFWGEIELPELGNGECCFGYSSSSPSGSTSWVSSGGGDMAVWSSEVEILQQQPFMFMACL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1548 183 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lal3g1548 183 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Lal3g1548 183 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Lal3g1548 183 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Lal3g1548 183 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Lal3g1548 183 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Lal3g1548 183 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lal3g1548 183 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Lal3g1548 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 157 - -
Lal3g1548 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 6 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1548 Lal-Chr3 21238981 21239532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1548 21 183 AP2-EREBP Transcription Factor Family AT1G01250 59.880 7.53e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal3g1548 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1548 K09286 - gmx:100802036 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1548 3 21238981 21239532 Lal3g1548 3 21238981 21239532 ECH
Lal3g1548 3 21238981 21239532 Lal6g0633 6 4121349 4121891 PCT
Lal3g1548 3 21238981 21239532 Lal22g0572 22 3917485 3917997 PCT
Lal3g1548 3 21238981 21239532 Lal18g1040 18 13410282 13410797 PCT
Lal6g0633 6 4121349 4121891 Lal3g1548 3 21238981 21239532 PCT
Lal22g0572 22 3917485 3917997 Lal3g1548 3 21238981 21239532 PCT
Lal18g1040 18 13410282 13410797 Lal3g1548 3 21238981 21239532 PCT