Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1547 ATGGCACATATGTGGAATACTGAAGCAGAATCAGGTTTTGGAGATGATGATCTAAATACACAGCTATGGAAGCTATGTGCAGGGCCTTTGGTGAATGTTCCTCATGCTGAAGAGAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAATTGCAAGCATCAACAAATCAGGAATTGAACCAACAAATTCCCCATTTCAATCTCCCTTCCAAGATTCTTTGCCGCGTTATGCACATTCACTTGTTGGCTGAACAAGACACTGATGAAGTTTATGCTCGTATCACTTTGCTTCCGGAATCAGATCAAAATGAGCCTACTAGTCCTGATCCATATCCACATGAGACTCAGAAACAGACCATTCACTCTTTTAGCAAGATATTAACCGCATCCGATACCAGCACGCACGGAGGATTTTCAGTTCTGCGTAGACATGCTACTGAGTGCTTGCCTCAACTGGATACGGCGCAACAAACCCCAACCCAGGAGTTATCAGCAAAGGATCTTCATGGCTTTGAGTGGAAGTTTAAGCATATTTTTAGAGGCAATTTTGTTTTTATACTGGATAATACTATAAAGAATGCTAAGGAACGCCAACCAAGGAGGCACTTGCTTACAACTGGTTGGAGTTCATTTGTCACTTCCAAAAGATTGGTCGCTGGAGACGCTTTTGTCTTTTTAAGGGGAGAGAACGGTGAACTGAGAGTTGGTGTTAGGCATCTCGCTCTGCAGCAGAGTCCGATGCCTTCGTCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTACTCGCCACTGCTTCTCATGCTGTTATGACTGGTACCATGTTTGTGGTTTATTACAAACCGAGAACTAGCCAGTTTATTATTGGCCTGAACAAATATCTGGAGGCAGTTAACAATAAATTTTCAGTTGGCAAGCGATTCAAGATGAGATTTGAGGTTGAGGACTCACCTGAGAGAAGGTTTTCCGGTACTATTGTCGGGGTTGGGGATGTATCTCCTGCATGGTCAAATTCTCAATGGCGTTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCTAGGCCGGAGAGGATTTCTGCTTGGGAGTTAGAACCTTTTGTAACTTCTACTGCTGTAACTGTCACTCAGCCGATGGCAAAGAGCAAAAGATCTAGGCCTGCTGATGCTCAATCATCTGAAGTTGCTCCCAATTCTCCTGCTTCAACTTTCTGGTATCATGGGCCTTCCTTGTCTCAATTAGGTGGTGTTTGCGAAGTTCAGAGCAACGAAAGTCATGCCGTGTGGTCTTTGAGGCAGAAAGAAATTAATGATAATCCAATCGATACCAACTATGCTAGCTCTAGAGTACGAATCGAAGGCATATGGCCTTCATCTCCTCATTTGAATGTCCCTTCAAACTATTTTCCAGACCTCAGAAACAACAAATCTGTCCGGACGACACAATCGTCGAATGTTGGCTGTTCTCCTACTTCATCTACGCCTAACGATGGTTCAATGCATGACCAAGTTGTCAATGGTAAAAGGACAGAGAATCGCTTAGACATCTGGGTATTTGGTGTAAATTTGAGTAGCAATTTAGCCAATGTTGCAGTTTCTCCGAAGGAATTTGAATGTCCAACTACTGTTCCTAGTGCTCTCAAAGAATCTGTTCCTGTTGCTGCATGTGAAAGTGATACTTGTCAGAATCTCAATAATTCACTGTCCGATAAGGAGCAGAAGCAAATTACTTCTGGTGCATCACCAAATGAGAGGCAGAACACGCAGACCTCTGCACCGTCCTTGAGGACTCGTACTAAGGTGAAAATGCAAGGTGTTGCTGTTGGTCGCGCTGTTGATTTGACCATGTTGAATGGTTATGATGATCTAATAGACGAGCTTGAGAAGTTATTTGATATTAAGGGAGAGCTTCATTCGCAAAACAAATGGGTGATTACTTATACCGACGATGAAAATGACATGATGCAAGTTGGTGATGATCGATGGCCGGAATTCTGTATTATTGTGAAGAGGATTTTCATTATTTCAAAAGAAGATGTGAAGAAGATAAAATCCAAGGATACTGTTGCTTCATCAGAGATTGAAGAGACTTTGCTAAGTACAGATTTCACAGAGTAG 2118 0.4268 MAHMWNTEAESGFGDDDLNTQLWKLCAGPLVNVPHAEERVYYFPQGHMEQLQASTNQELNQQIPHFNLPSKILCRVMHIHLLAEQDTDEVYARITLLPESDQNEPTSPDPYPHETQKQTIHSFSKILTASDTSTHGGFSVLRRHATECLPQLDTAQQTPTQELSAKDLHGFEWKFKHIFRGNFVFILDNTIKNAKERQPRRHLLTTGWSSFVTSKRLVAGDAFVFLRGENGELRVGVRHLALQQSPMPSSVISSQSMHLGVLATASHAVMTGTMFVVYYKPRTSQFIIGLNKYLEAVNNKFSVGKRFKMRFEVEDSPERRFSGTIVGVGDVSPAWSNSQWRSLKVQWDEPATIPRPERISAWELEPFVTSTAVTVTQPMAKSKRSRPADAQSSEVAPNSPASTFWYHGPSLSQLGGVCEVQSNESHAVWSLRQKEINDNPIDTNYASSRVRIEGIWPSSPHLNVPSNYFPDLRNNKSVRTTQSSNVGCSPTSSTPNDGSMHDQVVNGKRTENRLDIWVFGVNLSSNLANVAVSPKEFECPTTVPSALKESVPVAACESDTCQNLNNSLSDKEQKQITSGASPNERQNTQTSAPSLRTRTKVKMQGVAVGRAVDLTMLNGYDDLIDELEKLFDIKGELHSQNKWVITYTDDENDMMQVGDDRWPEFCIIVKRIFIISKEDVKKIKSKDTVASSEIEETLLSTDFTE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1547 705 ProSiteProfiles B3 DNA-binding domain profile. 123 241 IPR003340 GO:0003677
Lal3g1547 705 MobiDBLite consensus disorder prediction 378 399 - -
Lal3g1547 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal3g1547 705 Gene3D - 592 684 - -
Lal3g1547 705 SMART B3_2 123 241 IPR003340 GO:0003677
Lal3g1547 705 MobiDBLite consensus disorder prediction 479 501 - -
Lal3g1547 705 Gene3D - 300 373 - -
Lal3g1547 705 Pfam Auxin response factor 265 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal3g1547 705 PANTHER AUXIN RESPONSE FACTOR 11 7 691 - -
Lal3g1547 705 Gene3D - 120 240 IPR015300 -
Lal3g1547 705 CDD B3_DNA 121 238 IPR003340 GO:0003677
Lal3g1547 705 ProSiteProfiles PB1 domain profile. 596 688 IPR000270 GO:0005515
Lal3g1547 705 Pfam B3 DNA binding domain 123 238 IPR003340 GO:0003677
Lal3g1547 705 SUPERFAMILY DNA-binding pseudobarrel domain 112 268 IPR015300 -
Lal3g1547 705 Pfam AUX/IAA family 566 632 IPR033389 -
Lal3g1547 705 SUPERFAMILY CAD & PB1 domains 591 672 - -
Lal3g1547 705 MobiDBLite consensus disorder prediction 566 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1547 Lal-Chr3 21214129 21218651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1547 14 683 B3 DNA Binding Superfamily AT4G23980 56.065 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal3g1547 AUX_IAA 1.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1547 K14486 - gmx:100795763 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1547 3 21214129 21218651 Lal3g1547 3 21214129 21218651 ECH
Lal3g1547 3 21214129 21218651 Lal18g0292 18 2421760 2426809 LSH