Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1538 ATGCTTCTCTACAAACTCATATTTCTCATAATCCTCATTCTCTTCCTCTTATTTCTTCTTCGCATATTTCTCTTCAAAACCGGATTAATCTACACCGTTAATAAGCTATGGAGAATCACACTAGATTGGTGCCACGTGTACCAATTTCTCACAATCCCAGAACTCCAAAACGAAACGTTTCATCACAATCCTCTTTACACAAAAGTCTCTCTCTATTTACACACTCTCTCTTCTATCGAAGACTCTGATTTCACCAACCTTGTTACTGGGAACAACCAAAACGACATCGTTTTAACCCTAAACCCTAATCAGATTATCGAAGATCATTTTCTCGGAGCCACGGTTTTCTGGTTCAACGATTCAAATCCTAGAGCGTTTGTTTTGAAAATCAGAAAAGAAGATAAGAGAAGAATTCTCCGTCCTTATCTTCACTATATTCACACGGTTTCAGATGAGATTGAGGAAGAAGGAAAACGCGATTTGCGGTTGTTTATGATCGACGGTGGAGATCGAAATCAACGGTGGAGATCTGTTCCGTTCACTCATCCGTCAACATTTGAAACAATGGCGATGGAAACTGATCTGAAGAACAGAGTCAAATCCGATCTCGAATCGTTTCTGAAATCGAAACAACACTATAATCGATTAGGCCGTGTTTGGAAACGGAGTTTTCTGTTGTACGGTCCTTCCGGTACCGGAAAATCAAGCTTCGTTGCCGCCATGGCGAATTTCCTCAAATACGACGTTTACGACATCGATCTCTTCAGAATTCAAACAGATTCAAATCTGAAATCGCTTCTCCTTCAAACGAAACCGAAATCGATTATCGTAATCGAAGACCTTGACCAGTTTCTTCAAGAGAATGAGAAAAGAGCAACAAAAACATCGTTGAGTTCATCAAGTTTATTGAATTTCATGGACGGAGTTGTAAGTTGTGAAGAGATAGTAATGGTTTTCACAATGAGAACAAAGGAAAATATTGACCCGAATTTTCTTCGACCGGGTCGGGTCGATATCCATATATATTTTCCGCTATGCAATTTCTCAACGTTTAAAACAATGGCGAATAACTACCTTGGTGTGAAAGAGCATAAATTATTTCCTCAAGTGGAGGAGATTTTTGGAAAAGGAACGAGTTTGAGTCAAGCTGAGATCAGTGAGTTGATGATCGTGAATCGTAACTCACCGAGTCGAGCTATTAAATCAATCATCAATGTGTTGCAAATGGATGGTGATGGGAGGAGGAGCATATTGATCGGACGGCAGGGAGAGAATGATGAGAAAGATGAGAATGATGATGGAATTAGTGATAGTGTTTTTAGTTTGAAGAATAGTAGAGGAGGATTTTCTTCATCTAATAATTCATTGGCAAGTACTTTCAGATAA 1386 0.3918 MLLYKLIFLIILILFLLFLLRIFLFKTGLIYTVNKLWRITLDWCHVYQFLTIPELQNETFHHNPLYTKVSLYLHTLSSIEDSDFTNLVTGNNQNDIVLTLNPNQIIEDHFLGATVFWFNDSNPRAFVLKIRKEDKRRILRPYLHYIHTVSDEIEEEGKRDLRLFMIDGGDRNQRWRSVPFTHPSTFETMAMETDLKNRVKSDLESFLKSKQHYNRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLKYDVYDIDLFRIQTDSNLKSLLLQTKPKSIIVIEDLDQFLQENEKRATKTSLSSSSLLNFMDGVVSCEEIVMVFTMRTKENIDPNFLRPGRVDIHIYFPLCNFSTFKTMANNYLGVKEHKLFPQVEEIFGKGTSLSQAEISELMIVNRNSPSRAIKSIINVLQMDGDGRRSILIGRQGENDEKDENDDGISDSVFSLKNSRGGFSSSNNSLASTFR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1538 461 Gene3D - 175 345 IPR027417 -
Lal3g1538 461 Pfam ATPase family associated with various cellular activities (AAA) 225 345 IPR003959 GO:0005524|GO:0016887
Lal3g1538 461 SMART AAA_5 220 347 IPR003593 -
Lal3g1538 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 401 IPR027417 -
Lal3g1538 461 Pfam Domain associated at C-terminal with AAA 35 117 IPR025753 -
Lal3g1538 461 CDD AAA 221 345 - -
Lal3g1538 461 PANTHER BCS1 AAA-TYPE ATPASE 8 438 - -
Lal3g1538 461 PANTHER BNAC04G00800D PROTEIN 8 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1538 Lal-Chr3 21086152 21087537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1538 179 344 Miscellaneous Gene Families AT5G53170 27.586 1.27e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1538 3 21086152 21087537 Lal3g1538 3 21086152 21087537 ECH
Lal3g1538 3 21086152 21087537 Lal6g0624 6 4038034 4039275 PCT
Lal6g0624 6 4038034 4039275 Lal3g1538 3 21086152 21087537 PCT