Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1533 ATGGGGAAGAAAGGAAGTAGTAGTTCATGGTTAAATGCTGTCAAAAGGGTATTCAGATCTCCAACTAAAGACAGTAACATTAACAAAAGAAGAGAGGATTATGACCAACAACAACAACAACAACAACAACAAGACAAGAAGAGAGATAAAGGAAGGTGGTTTTTTAGAAAACCTGCAAATCATGAAAGTGTTGGTACTAAACAAACACCAACAAAGGTTGTTGTTGCAAGTGAGATTTCTACTATAACAGAACAAGTGTCAAGGTTGAAGGAGTGTGCTAATAATGGTGAGGAACAAGAAGCTGCTATTGTGATTCAAACTGCTTTCAGAGGATATCTAGCAAGAAGAGCACTTGGCGCGCTTAAGGGGCTGGTGAAGTTACAAGCATTAGTAAGGGGTCACAATGTTCGGAAGCAAGCAAAGTTGACTCTTCGTTGCATGCAAGCATTGGTTCGAGTCCAAGCTAGGTTGCTTGATCAACAACGTACAAGGTTTTCGCATCAAGTTAGTAGCGGAACATCCACTTTCCGTGACACGAATATGCAGTATCTTCAAGACATTTCAGATTGGAAATCACTAACAAGAGAGGGAAGTAGCAATGCAAGTGATTGGGATGAACATCCACACACAGTTGAAGAAATTAAAAGCATGTTGCAGAAAAGGAAAGAAGCAGCTATGAATCGAAACAAGTCCTCGACTCAAGCTTTTCCTCAACAGGGTACTAAAAAGGCATGGGAGAATAGAGGAAGAGTCTCAACTAATCAAAGAGACCTCATTAAGACTGTGGAAATTGACTCCTCTCAACCTTATTCGTATTTCGGATCGAATACTTACCGAAGATCACATCCAAATTATCAATGTAACCCTCAGTCACACCGACATCAAAGGCATTCAATTGCCATCCAAAATGGACCAATTCATCAATCCCCTGTAACCCCGTCTCCCGGGAAATCAAGAACGATCCAAGTCCGATCGGCTAGCCCTCGATGTGGTAGAGAAGATATAAGCAACCAAACCTCTGAAACACCAAGCCTAAGGTTCAATAATAATTATCATTGTAAAGGAAATGTGTACTCAAGTAGCAGGGCTGGAACAAGTAATGGTACTAGTGGTGGTGTAACATATCCGAATTACATGGCTACAACAGAGTCGGCGAAGGCGCGAATTCGATCACAGAGTGCACCTAGGCAGAGGGTATTGACACCAGAGAAGGACAGAGCAGGGTCAGCAAAGAGAAGACTTTCTTACCCTGCTCCTGACCCTTCTTATAATTATAGGCATAGTTTAAGAAGTCCAAGCTTAAGGAGTGTGAGTAAGTCACATTTTGGGTTGGAGAAATATTCCAACTACTCTTCTTGCTGCACTGATAGTCTTGGTAGTGAAATTTCTCCATCTTCAACTACTGACCTTAGGTGGTTAAAATGA 1425 0.4154 MGKKGSSSSWLNAVKRVFRSPTKDSNINKRREDYDQQQQQQQQQDKKRDKGRWFFRKPANHESVGTKQTPTKVVVASEISTITEQVSRLKECANNGEEQEAAIVIQTAFRGYLARRALGALKGLVKLQALVRGHNVRKQAKLTLRCMQALVRVQARLLDQQRTRFSHQVSSGTSTFRDTNMQYLQDISDWKSLTREGSSNASDWDEHPHTVEEIKSMLQKRKEAAMNRNKSSTQAFPQQGTKKAWENRGRVSTNQRDLIKTVEIDSSQPYSYFGSNTYRRSHPNYQCNPQSHRHQRHSIAIQNGPIHQSPVTPSPGKSRTIQVRSASPRCGREDISNQTSETPSLRFNNNYHCKGNVYSSSRAGTSNGTSGGVTYPNYMATTESAKARIRSQSAPRQRVLTPEKDRAGSAKRRLSYPAPDPSYNYRHSLRSPSLRSVSKSHFGLEKYSNYSSCCTDSLGSEISPSSTTDLRWLK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1533 474 Pfam IQ calmodulin-binding motif 100 117 IPR000048 GO:0005515
Lal3g1533 474 Pfam IQ calmodulin-binding motif 125 141 IPR000048 GO:0005515
Lal3g1533 474 MobiDBLite consensus disorder prediction 227 249 - -
Lal3g1533 474 MobiDBLite consensus disorder prediction 304 349 - -
Lal3g1533 474 SMART iq_5 97 119 IPR000048 GO:0005515
Lal3g1533 474 SMART iq_5 120 141 IPR000048 GO:0005515
Lal3g1533 474 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Lal3g1533 474 MobiDBLite consensus disorder prediction 1 51 - -
Lal3g1533 474 Pfam Protein of unknown function (DUF4005) 327 424 IPR025064 -
Lal3g1533 474 MobiDBLite consensus disorder prediction 1 21 - -
Lal3g1533 474 MobiDBLite consensus disorder prediction 228 249 - -
Lal3g1533 474 MobiDBLite consensus disorder prediction 385 427 - -
Lal3g1533 474 MobiDBLite consensus disorder prediction 22 51 - -
Lal3g1533 474 Gene3D - 97 163 - -
Lal3g1533 474 PANTHER IQ-DOMAIN 5-RELATED 1 472 - -
Lal3g1533 474 PANTHER IQ-DOMAIN 17 1 472 - -
Lal3g1533 474 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1533 Lal-Chr3 21032200 21035372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1533 1 474 IQD Protein Family AT1G01110 45.699 3.06e-125 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1533 - - lang:109345736 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1533 3 21032200 21035372 Lal3g1533 3 21032200 21035372 ECH
Lal22g0551 22 3740151 3743203 Lal3g1533 3 21032200 21035372 ECH