Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1532 ATGATCTCTTATACCATTTTATTAAACCCTAGATTCACATTACATTTGCGGCGTGTACCCAATTCGCAGAGAAAGCTCATTTCACTATTCTACGATCTCTTCCTCTCTAGTTTGAAAATGTCGATTGGTGAAACTGCTTCCACTTACGCTGCTTTGATCCTCCATGATGAACAAATCCCTATCACTGCTGATAAAATTTCTGCCTTATTGAAAAGTGCCAATGTTAAAGTTGAATCATATTGGCCCACCTTATTCGCTAAACTCGCTGAGAAGCGTAGTATTGGGGAATTGCTAGCAAGTGCTGGAGGTGCTGGAGCTCCTGTTGCTGTTGCAGCAGCGCCAGTTGCTGTTGCAAGTGGTGGTGGTGCTGCTGCCGCTGCTCCTGCTCCTCAGCAGGAAGAACCGAAAGAAGAGAGTGATGATGATATGGGATTCAGCTTGTTCGATTAG 450 0.4467 MISYTILLNPRFTLHLRRVPNSQRKLISLFYDLFLSSLKMSIGETASTYAALILHDEQIPITADKISALLKSANVKVESYWPTLFAKLAEKRSIGELLASAGGAGAPVAVAAAPVAVASGGGAAAAAPAPQQEEPKEESDDDMGFSLFD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1532 149 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 40 139 - -
Lal3g1532 149 CDD Ribosomal_P1 44 148 - -
Lal3g1532 149 MobiDBLite consensus disorder prediction 123 149 - -
Lal3g1532 149 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 40 139 - -
Lal3g1532 149 Hamap 50S ribosomal protein L12 [rpl12]. 45 149 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lal3g1532 149 Pfam 60s Acidic ribosomal protein 61 148 - -
Lal3g1532 149 Gene3D - 40 102 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1532 Lal-Chr3 21028810 21030240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1532 40 149 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.724 2.64e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1532 K02942 - egr:104443735 120.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1532 3 21028810 21030240 Lal17g0611 17 4377794 4379733 ECH
Lal3g1532 3 21028810 21030240 Lal4g0536 4 3897580 3899713 ECH
Lal3g1532 3 21028810 21030240 Lal21g0595 21 4484957 4486631 ECH
Lal3g1532 3 21028810 21030240 Lal3g1532 3 21028810 21030240 ECH