Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1529 ATGGCGGCGAATGCTAGTCTATCTCTTTGTTTCAATTATTGCTTATTGAAGAATAAGCCCCAATTCGTAACTTTTTCAAAACGACGCGTTTCATTTTCACCAGTTCCCATTGAGTTCAGGTCTAATGCTAGGGTTTGCACAGCTTTGGCAGCAGAACATGTAAACGACGACGTTTCAGAAGATGATGAACATTGGATGCAGCCAAGACCTACAGAAGTTTACGTTTGTAACCTTCCTAGAAAAATCGATTCGGAATATCTACTTGAATTGTTCAGGCCTCACGGAAATGTGTTAAATGTAGAGGTTTGCCGGAATGCCGAGACTGGTGAAAGTAAAGGGTGTGCTTATGTCACATTGGAATCCATTAACTCAGCAAGAAATGCAGTTTCTGCATTGGATGGATTGGATGTTGGTGGGCGCGAAATGCGGGTTAGATTTTCAGTTGAGATGAATCGTAGAGGGAAGAATCGTAAGACAATGAACTCTTCTCCGAAGAAAGTTATATACTACGAAGCTCCTCATCAATTGTATGTTGGGAATCTTCCTAAGCATGTTAGGCCTGAAGAATTAAGACATCTCTTTGTTAGATTTGGTACTGTGGCTAGTTTAAGGATATTTGTTGATAAGAAGGAGGAAATATCTCGAGTCTATGCATTTGTCTCTTTCGTTTCAGAGAGAGAACGCGACGCAGCAATGTCCATCAATGGAATAGCATTTGGCGGTCGTACACTAGTGCTTAGACAACAAGGGGATGGAAAAGTCTGA 765 0.4131 MAANASLSLCFNYCLLKNKPQFVTFSKRRVSFSPVPIEFRSNARVCTALAAEHVNDDVSEDDEHWMQPRPTEVYVCNLPRKIDSEYLLELFRPHGNVLNVEVCRNAETGESKGCAYVTLESINSARNAVSALDGLDVGGREMRVRFSVEMNRRGKNRKTMNSSPKKVIYYEAPHQLYVGNLPKHVRPEELRHLFVRFGTVASLRIFVDKKEEISRVYAFVSFVSERERDAAMSINGIAFGGRTLVLRQQGDGKV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1529 254 SUPERFAMILY RNA-binding domain, RBD 173 246 IPR035979 GO:0003676
Lal3g1529 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 143 IPR000504 GO:0003723
Lal3g1529 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 244 IPR000504 GO:0003723
Lal3g1529 254 PANTHER OS02G0815200 PROTEIN 50 248 - -
Lal3g1529 254 CDD RRM_SF 176 247 - -
Lal3g1529 254 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 50 248 - -
Lal3g1529 254 SMART rrm1_1 72 145 IPR000504 GO:0003723
Lal3g1529 254 SMART rrm1_1 175 247 IPR000504 GO:0003723
Lal3g1529 254 Gene3D - 41 155 IPR012677 -
Lal3g1529 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Lal3g1529 254 CDD RRM_SF 73 145 - -
Lal3g1529 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Lal3g1529 254 SUPERFAMILY RNA-binding domain, RBD 63 158 IPR035979 GO:0003676
Lal3g1529 254 Gene3D - 156 252 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1529 Lal-Chr3 21017324 21022559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1529 62 246 Eukaryotic Initiation Factors Gene Family AT1G22760 27.136 2.24e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1529 - - lang:109345739 446.047