Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1527 ATGGCAAATTCAGAGAACAAGTCTAAGAAGTTTGGTGATGGTGATGTTATCTACAAAGAATCACAAGAACTAGAAGAAGAAGAAGAAGCATTCTCATATGCAACACAACTTGTAATGTCAACAGCTCTATCAATGTCACTGCAATCAGCATTTGAGCTTGGTGTTTTTGATATCTTACAAAAAGCTGGTTCAGGTGCACAACTTTCTGCTAAGCAATTTGCATCACAACTTTCTTGTAACAATCCAGAAGCAGCTTCTATGTTAGATCGTGTTCTTGGTCTTTTTGTATCTCATAATATACTTAAATGTACTCTCATTCCTCTTCATCAAAATCTTGGATCCTTTCAGAGGCTCTATAGTATGACTCCTGTGGCTAAATTCTTTGTAACTGATTCTGATGGTTTTTCATTAGGACCCTTGATGGCTTTGATTCAAGATAATATCTTCCTACAAAGCTGGTCCCAATTGAAAGATGCAATTATGGAAGGGGGTGTTCCATTTGTCAGGGTTCATGGCACACATGCCTTTGAGTATCCAAGCTTGGACTCAAGATTCAACCATGTTTTTAATACGGCAATGATGAACCAAACCACTATAGTTATGAAGAAGGTTGTTGAAAGTTATAAAGGTTTTGAGGGTATAAAAAAGCTTGTGGATGTTGGTGGGGGTCTTGGTATAAGTATTAACTTGATCACTTCCAAGTACCCAAATATTAAGGGTATCAATTTTGACTTACCTCATGTCATACAACATTCTCCTTCATATCCTGGAGTGGAACATGTTGCAGGAGATATGTTTCAAAGTGTGCCTAAAGCAGATGCCATATTTATGAAGTGGATACTTCATGATTGGAGTGATGATCACTGTTTGAAGCTATTAAAGAATTGCTATGATGCTATTCCTAATGATGGGAAAGTGATTATAGTGGAAGCAGTTCTTCCTATTATGCCTGAGAATAATACTGCATGGAAAGCTGTTTCACAATGTGATGTTATGATGATGACTCAAAATCAAGGAGGGGAAGAGAGAAGTGACCAAGAATTCATGGACTTAGCAATTGGAGCTGGATTTAGTGGCATTAGATATGAATGCTATGTACATTCATTTTGGATTATGGAGTTCTTCAAGTAG 1131 0.3714 MANSENKSKKFGDGDVIYKESQELEEEEEAFSYATQLVMSTALSMSLQSAFELGVFDILQKAGSGAQLSAKQFASQLSCNNPEAASMLDRVLGLFVSHNILKCTLIPLHQNLGSFQRLYSMTPVAKFFVTDSDGFSLGPLMALIQDNIFLQSWSQLKDAIMEGGVPFVRVHGTHAFEYPSLDSRFNHVFNTAMMNQTTIVMKKVVESYKGFEGIKKLVDVGGGLGISINLITSKYPNIKGINFDLPHVIQHSPSYPGVEHVAGDMFQSVPKADAIFMKWILHDWSDDHCLKLLKNCYDAIPNDGKVIIVEAVLPIMPENNTAWKAVSQCDVMMMTQNQGGEERSDQEFMDLAIGAGFSGIRYECYVHSFWIMEFFK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1527 376 Pfam Dimerisation domain 45 94 IPR012967 GO:0046983
Lal3g1527 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 376 IPR016461 GO:0008168
Lal3g1527 376 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 20 376 - -
Lal3g1527 376 PIRSF O-mtase 17 376 IPR016461 GO:0008168
Lal3g1527 376 Gene3D - 15 128 IPR036388 -
Lal3g1527 376 SUPERFAMILY "Winged helix" DNA-binding domain 25 131 IPR036390 -
Lal3g1527 376 Pfam O-methyltransferase domain 153 358 IPR001077 GO:0008171
Lal3g1527 376 PANTHER O-METHYLTRANSFERASE 20 376 IPR016461 GO:0008168
Lal3g1527 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 374 IPR029063 -
Lal3g1527 376 Gene3D Vaccinia Virus protein VP39 129 376 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1527 Lal-Chr3 21009230 21011908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1527 27 376 Monolignol Biosynthesis Gene Families AT5G54160 49.429 7.17e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1527 K13066 - gmx:100803633 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1527 3 21009230 21011908 Lal3g1527 3 21009230 21011908 ECH