Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1513 ATGTGTGGTGGTGCTATTATCTCCGATTTCATTTCCGGTGGCGGAGCTCCGGCAAGGTCTCGCCGACTCACCGCTGATTTTCTGTGGCCAGATTTGAAGAGTAGCAATCCTTGGATGAGTAAGCGTAAGCCAGTGATCGATTTCAATGATGAGTTCGAAGCTGATTTTAGGGATTTTGAGGAAGATTCTGATATCGAAGATGAATTTGATGAAGATGATTTCAATATTGATTCAAAAAAGAAGCCTTTTTCTTACAAAGCATCTAAACCTTACAATTTGATCACTCGTGGATATACTGCTTCAAAACCTGTGGTACTCGAAGGGCAAGCTGAGAAGTGTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATTCGTCAGCGTCCTTGGGGAAAATGGGCTGCTGAGATCAGGGACCCGAGAAAGGGTGTTCGTGTATGGCTTGGAACCTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCGCGGAGGATCCGTGGCACAAAAGCAAGGGTGAATTTCCCTGACGAGGCTCCAGTTACTTCCTCGAAACGTTCCAGGCCAAATCCAAAGGAGCAACTAGCAAAGGAAAATCTGAACACTGTTCAGCCCCATGGCAATCTGAATGCTGTTCAGTCCAATGGCAATCTGAACGCTGTTCAGCCCAATGGCAATCTGAACGCTGTTCAGCCCAATGGCAATCTGAACGCTGTTCAGCCCAATGGCAATCTGAACGCTGTTCAGCCCAATGCCAACGTGAGCCACGAGTTCAATGTTGTTGGTAACAATGAGGACAGCATCTATGCTTCTATCGATCTGTTGGAACAGAAGCCGCTGGTTAACCAGTATGCTAACATGGGTTCGTTCTCTAGTAGTAGAAATGATATCACTTCTCTTGCTTCATCTGATGATTTCACCCGTTACTTCAGTTCAGATCAGGGAAGTAATTCATTTGATTATTCAGATCTGCCTGAGATATCATCCATGCTTTCTGCTCCTGTGGAAGGTGATACTCATTTTGTGCAAGATGCCAATCAGCAGCAGAAAAATCTTCATTCTGACTCTCAGGATGGTTCTGCAAAGACACTGTCTGAGGAGCTTGCAGATATTGAATCCGAGTTGAACTTCTTCAAGATGCCATATCTTGAAGGAAGCTGGGATGATGCTTCATTGGAGTCCTTTCTTGCTGGAGACACGACTCAAGATGACAGAAACCTGACGAACTTTTGGAGCTTTGATGACATCTCCATGGGTGGCAGTGGCGGAATTTTCTGA 1284 0.454 MCGGAIISDFISGGGAPARSRRLTADFLWPDLKSSNPWMSKRKPVIDFNDEFEADFRDFEEDSDIEDEFDEDDFNIDSKKKPFSYKASKPYNLITRGYTASKPVVLEGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGTKARVNFPDEAPVTSSKRSRPNPKEQLAKENLNTVQPHGNLNAVQSNGNLNAVQPNGNLNAVQPNGNLNAVQPNGNLNAVQPNANVSHEFNVVGNNEDSIYASIDLLEQKPLVNQYANMGSFSSSRNDITSLASSDDFTRYFSSDQGSNSFDYSDLPEISSMLSAPVEGDTHFVQDANQQQKNLHSDSQDGSAKTLSEELADIESELNFFKMPYLEGSWDDASLESFLAGDTTQDDRNLTNFWSFDDISMGGSGGIF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1513 427 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Lal3g1513 427 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Lal3g1513 427 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Lal3g1513 427 MobiDBLite consensus disorder prediction 348 367 - -
Lal3g1513 427 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Lal3g1513 427 PANTHER DNA-BINDING DOMAIN 1 261 IPR044808 GO:0003700|GO:0009873
Lal3g1513 427 PANTHER DNA-BINDING DOMAIN 260 419 IPR044808 GO:0003700|GO:0009873
Lal3g1513 427 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Lal3g1513 427 MobiDBLite consensus disorder prediction 348 365 - -
Lal3g1513 427 PANTHER EREBP TRANSCRIPTION FACTOR 260 419 - -
Lal3g1513 427 PANTHER EREBP TRANSCRIPTION FACTOR 1 261 - -
Lal3g1513 427 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Lal3g1513 427 MobiDBLite consensus disorder prediction 173 194 - -
Lal3g1513 427 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Lal3g1513 427 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1513 Lal-Chr3 20892088 20894797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1513 1 424 AP2-EREBP Transcription Factor Family AT3G14230 39.644 1.67e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal3g1513 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1513 K09286 - gmx:100170723 375.17