Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1504 ATGGGGAAGGCAGGGAAATGGATTAAAAACTTTCTTTTAGGGAATAAGGAAGAGAAGTACAAGAAGATTGATACATTTTGCTCTGAGGATAAGAGTGCCAGCATGATGGATAGTCAGATGGTAAGTCCTAATGTGAAGCGTAGATGGAGTTTTGGAAGATTAAGTGGTAGAAGTGGAAGAAAGACTAGCATGGTAGCAGGGCATAATTTTTCTATATCTTTTGACTCAGGTGATTCTGCCAGACTGCGAATCCAAGCCTTGTTGGAAACACAAGGTTCTAGGAGTCTTCCAACAGCACTACCACATGTTTCTAGATACGGAAGACATAAAACTGCAGCTGCTACGAAGATTCAAGCTGCCTTTCGCTCATACTTGGCAAGGAGAGCATTGCATGCTTTAAGGGGATTAGTCAAGTTACAGGCACTGGTAAGGGGTCACCTTGTAAGGAAACAAACAACTGCTACACTGCGTGGCATGCATGCGTTGATGGCGATCCAAGTTAGAACCCGAATTCACAGAATTCAGATGGTTGAGGAAGCAAATCTTCATGGGAAACAGCCTCTGCATCATAGAGAAGTTCATAGAGAAGTTCCTCGCCACAAGGGTCTCACAAGAAAAAATAAACATTCAAAGGGTATGAGTATGGATGAAATGCTGGAAGCTTTGAAAAGCAGAAGTTCCCCTGTACATCATTCACATGTGAAGAGCATGGAGCATGACCCCATGACATTCTATTCAAACCGTATGTCAGTTTCAAACCGAAAACTTCAATACAAGGAGAATACTTTAATCACAGCAACAAAAAGCTCAGAACACTACATGCCTGTGTCTGAATTAAATCCAACAGCAATAGCATTATCAACTTCTGAGTGCCATGAAATGTCTCACAACCAATCACGCTCACCAAGTTACATGTGCAAGACACAATCTTCAAGAACAAAAGCAAGGTCTCTTAGTGAACCAAAACAACGACCCAAAAAGGGAATGAGGCACAAAAATAAGTCTATAGAATCTACGGATGATCTTAGTACCTCACTTAATGGTCCAAGGCATAGTGTGTCCTCTGAGTCGTCACGCTTCGATCAAAGAAGCTTTGACCAATGGATTATTAACCTCTATGGGTCAACGAAGGACGGCAGGCACGATTCCCATGGCAGCATCACGGTTAATAGTGATTCATACTATTGA 1188 0.4209 MGKAGKWIKNFLLGNKEEKYKKIDTFCSEDKSASMMDSQMVSPNVKRRWSFGRLSGRSGRKTSMVAGHNFSISFDSGDSARLRIQALLETQGSRSLPTALPHVSRYGRHKTAAATKIQAAFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRTRIHRIQMVEEANLHGKQPLHHREVHREVPRHKGLTRKNKHSKGMSMDEMLEALKSRSSPVHHSHVKSMEHDPMTFYSNRMSVSNRKLQYKENTLITATKSSEHYMPVSELNPTAIALSTSECHEMSHNQSRSPSYMCKTQSSRTKARSLSEPKQRPKKGMRHKNKSIESTDDLSTSLNGPRHSVSSESSRFDQRSFDQWIINLYGSTKDGRHDSHGSITVNSDSYY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1504 395 MobiDBLite consensus disorder prediction 290 358 - -
Lal3g1504 395 Gene3D - 108 161 - -
Lal3g1504 395 PANTHER IQ-DOMAIN 5-RELATED 1 382 - -
Lal3g1504 395 SMART iq_5 132 153 IPR000048 GO:0005515
Lal3g1504 395 SMART iq_5 109 131 IPR000048 GO:0005515
Lal3g1504 395 MobiDBLite consensus disorder prediction 339 358 - -
Lal3g1504 395 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Lal3g1504 395 MobiDBLite consensus disorder prediction 290 316 - -
Lal3g1504 395 Pfam IQ calmodulin-binding motif 137 151 IPR000048 GO:0005515
Lal3g1504 395 Pfam IQ calmodulin-binding motif 111 130 IPR000048 GO:0005515
Lal3g1504 395 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Lal3g1504 395 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 382 - -
Lal3g1504 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 152 IPR027417 -
Lal3g1504 395 MobiDBLite consensus disorder prediction 376 395 - -
Lal3g1504 395 Pfam Protein of unknown function (DUF4005) 290 352 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1504 Lal-Chr3 20819927 20822155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1504 1 325 IQD Protein Family AT4G14750 30.564 1.27e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1504 - - lang:109345769 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1504 3 20819927 20822155 Lal3g1504 3 20819927 20822155 ECH
Lal5g0087 5 847288 849237 Lal3g1504 3 20819927 20822155 LSH