Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1503 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCCTTCCTTGTGAATCATAAGCATGAGAAGAAAAGATATGTGCTGAAGAAGATTCGCCTTGCCCGTCAGACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTCATCTCCAAAATGAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATATGCTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTATGTTTTCTGAGGAGATAACAATCAGATCTGCACTTTTAAAATCTAAAAGAGTCATTAGTTTTCAGAAACTTTGTAAGTGGCTTGTTCAACTTCTCATGGCACTCGAGTACTTACACAAGAACCATATTCTTCATCGTGATGTAAAGTGCTCAAATATATTCTTGACAAAAGATCGCAACATACGTCTTGGTGATTTTGGACTTGCAAAAAAGTTAACCTCAGATGATCTTGCTTCCTCTGTTGTAGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCATATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACCTCACTTAAGCCTGCATTCAAAGCATTTGTAATTATTTCAGCTATTATTGGCAGTTCCAAATTGCACAGTGATGTCTTAACACTGTTAAATTTAGCATTTTCATGTCTTAAGCTAACAACTGTTGTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTAGAAATCGGAAACTATAATCTCTGCCCCGAAACATTTAAAGTTCAGAGACAGACTATGAATGATCTCAGGCAGGCTGCAGAGCTACTTGGGCACCCACATCTTCAACCTTATGTTCATAATATCCATCTCAAAATCAATAGCCCCAGGCGTGGTACATTACCGGGTCATTGGGAACAACCCAACTACATGAAGAAAACTAGATTTTCGAAGTCAGATGATTCTGTTTCCATCTATAGGGGTAAGTGGCATTCATTAAGCAATGATCAGACTTCAAATCCTAGTGTATCTGCAGCAGATGAAGATTCTCTATGCTCTACCCGAGAAATAGATTGTACCCCTGATTATTTGAATCAAAGATTAGCCGAGCTGTGTGTTGGAGATAGCCATGAAGTGAAGTCAAACATTAAGCCAGTTGTTTCCAGAACTTCTAGTGTTGCTAAGACTCCAAGACTAACTTCATCAAAAGCTTCTGCCACCCGCAACAAATCAATGAAACACTCAAAGAATCATAAGGAGCTTCCTATATCACACAGTACCAAACAATCTGTCCACGCAACTGGCAGAGCATCATTGCCGTTGCCAAGAAGTGGTGCCATTCAGCATCCTCCTCGAAGGGCCACTATTGCTTTACTTAGCAATGTAAATTCACTTAGTATTTCGGTGAATGCTCCCCATATTAATAAGATGGCAGAATTTCCATTAGCATCATATGATGATCAATTGTTTCCCATCGGCAGACATTTACCAACCTCTGCTCGTGGTTCTTCAAACTTCCCTCTATGTAGCAATGATTCAACTATGGTAGACAAATGTACAGTCGAGGTATGTGATATACCCAGTTCTGATACTTGGCAGGGAATCAGGCGCAGCATGTTCGAGGAAAAAAACAATGAGGATAAAAGTGTCTCATATGATAAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACCGCCGGCAGTTTGACACTTCATTCCAACAAAGGGCTGATGCCTTGGAGGGGTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGATGAACTTGGAGTGTTGTTAAAACCATTTGGCCCAGGAAAAGTTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGTGAACACTTTCAACCAGGAACAGTCGCGTAAACTGTTGTAA 2004 0.4082 MEQYEILEQIGKGAFGSAFLVNHKHEKKRYVLKKIRLARQTERSRRSAHQEMELISKMRNPFIVEYKDSWVEKGCYVCIIICYCEGGDMAEAIKKANGVMFSEEITIRSALLKSKRVISFQKLCKWLVQLLMALEYLHKNHILHRDVKCSNIFLTKDRNIRLGDFGLAKKLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFVIISAIIGSSKLHSDVLTLLNLAFSCLKLTTVVEVLLKACCGKIQSLGLVEIGNYNLCPETFKVQRQTMNDLRQAAELLGHPHLQPYVHNIHLKINSPRRGTLPGHWEQPNYMKKTRFSKSDDSVSIYRGKWHSLSNDQTSNPSVSAADEDSLCSTREIDCTPDYLNQRLAELCVGDSHEVKSNIKPVVSRTSSVAKTPRLTSSKASATRNKSMKHSKNHKELPISHSTKQSVHATGRASLPLPRSGAIQHPPRRATIALLSNVNSLSISVNAPHINKMAEFPLASYDDQLFPIGRHLPTSARGSSNFPLCSNDSTMVDKCTVEVCDIPSSDTWQGIRRSMFEEKNNEDKSVSYDKNATAGASSHNSSDLHRRQFDTSFQQRADALEGLLEFSARLLQQERYDELGVLLKPFGPGKVSPRETAIWLSKSFKVNTFNQEQSRKLL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1503 667 SMART serkin_6 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1503 667 Pfam Protein kinase domain 4 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1503 667 MobiDBLite consensus disorder prediction 576 591 - -
Lal3g1503 667 MobiDBLite consensus disorder prediction 413 433 - -
Lal3g1503 667 MobiDBLite consensus disorder prediction 413 455 - -
Lal3g1503 667 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lal3g1503 667 Gene3D Transferase(Phosphotransferase) domain 1 106 269 - -
Lal3g1503 667 ProSiteProfiles Protein kinase domain profile. 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal3g1503 667 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal3g1503 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lal3g1503 667 PANTHER SERINE/THREONINE-KINASE NEK4 1 229 - -
Lal3g1503 667 PANTHER SERINE/THREONINE-KINASE NEK4 297 649 - -
Lal3g1503 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 297 649 - -
Lal3g1503 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 229 - -
Lal3g1503 667 SUPERFAMILY Protein kinase-like (PK-like) 1 329 IPR011009 -
Lal3g1503 667 MobiDBLite consensus disorder prediction 568 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1503 Lal-Chr3 20813583 20823392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1503 3 220 MAP Kinase Kinase Kinase AT3G13530 30.594 6.09e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal3g1503 Pkinase 4.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1503 K08857 - gmx:100796019 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1503 3 20813583 20823392 Lal3g1503 3 20813583 20823392 ECH
Lal5g0088 5 849502 856462 Lal3g1503 3 20813583 20823392 LSH
Lal3g1503 3 20813583 20823392 Lal13g0695 13 4522238 4529382 PCT
Lal3g1503 3 20813583 20823392 Lal24g0538 24 3797511 3805648 PCT
Lal13g0695 13 4522238 4529382 Lal3g1503 3 20813583 20823392 PCT
Lal24g0538 24 3797511 3805648 Lal3g1503 3 20813583 20823392 PCT