Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1478 ATGTGTTTGCATAGAAACATGGCACTAGAAGCAGTGATATATCCACAACAACCACAACACCCTTTTGCTTATGTTTCAATCAAAGACCTTCTCAACTATAACAACAACAACAACAACAACAACTTCATTAACCTTAAACAACAAGATCAAAAAGGTTCTATAAACACTTTTCTAGATAACCAAACAGAAAAGAAACATCCTTATGAAGAATCATCTATGTTAATGCCACAAATGAATGTTGATGAAGGGCATGTCCCATATGATATTCCAATATCTTTAGATCAGTTCAACACAAACAAGTTAGTAGATAACTCAACAACTTCTTCAAAGGTTTCTAGGCCAAAGAGAAGAAGAGTCAAAAGTAGAAAGAATAAGGAAGAAATAGAGAACCAGAGAATGACTCACATTGCTGTTGAACGTAACAGAAGAAAACAAATGAATGAGTATCTTTCTCTTCTTCGTTCTCTCATGCCTGAATCTTATGTCCAAAGGGTTGATCAAGCATCCATAGTTGGAGGGGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTAAGAAAGAAAAAGTAGAAGGAAAATCTGATGCAAGTACAAGCATACCCTTTTCTGATTTTTTCACCTTTCCACAGTATTCAACAAGTGCTAGTTTCTGTGAAAATTCTCTGGCCATGAATGAGCAAATGAGTGAAGTTAAGTGTGGCATTGCTGATATAGAAGTGGCAATGATGGAGACTCATGCAAATCTCAAAATAAGATCAAAGAAAAGGCCCAAACAGCTGTTGAAAATAATCTCTAGTTTGCATGTAATGCATCTCACAGTTTTGCATCTAAATGTTAATACCAGTGGGGAAATTGCTCTCTATTGTCTCAGTGTTAAGGTGGAAGATGATTGCAACTTGAGATCAGTGGATGAGATAGCTGCAGCAGTATACCAAATACTGACTAGGATTCAAGAAGAGGCAATGTTGAATAATTAA 993 0.3625 MCLHRNMALEAVIYPQQPQHPFAYVSIKDLLNYNNNNNNNNFINLKQQDQKGSINTFLDNQTEKKHPYEESSMLMPQMNVDEGHVPYDIPISLDQFNTNKLVDNSTTSSKVSRPKRRRVKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSLLRSLMPESYVQRVDQASIVGGAINFVKELEQRLQFLGAKKEKVEGKSDASTSIPFSDFFTFPQYSTSASFCENSLAMNEQMSEVKCGIADIEVAMMETHANLKIRSKKRPKQLLKIISSLHVMHLTVLHLNVNTSGEIALYCLSVKVEDDCNLRSVDEIAAAVYQILTRIQEEAMLNN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1478 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 197 IPR036638 GO:0046983
Lal3g1478 330 Coils Coil 178 198 - -
Lal3g1478 330 MobiDBLite consensus disorder prediction 100 126 - -
Lal3g1478 330 PANTHER MAX DIMERIZATION, MAD 7 329 - -
Lal3g1478 330 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Lal3g1478 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Lal3g1478 330 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 7 329 - -
Lal3g1478 330 Gene3D - 119 204 IPR036638 GO:0046983
Lal3g1478 330 SMART finulus 136 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1478 Lal-Chr3 20667448 20669552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1478 7 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.768 8.56e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal3g1478 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1478 - - gmx:100782243 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1478 3 20667448 20669552 Lal3g1478 3 20667448 20669552 ECH
Lal5g0132 5 1185272 1188916 Lal3g1478 3 20667448 20669552 LSH
Lal3g1478 3 20667448 20669552 Lal12g0602 12 4343609 4345969 PCT
Lal3g1478 3 20667448 20669552 Lal13g0663 13 4309879 4312925 PCT
Lal12g0602 12 4343609 4345969 Lal3g1478 3 20667448 20669552 PCT
Lal13g0663 13 4309879 4312925 Lal3g1478 3 20667448 20669552 PCT