Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1477 ATGAGAACCACTTTATACATATGTTTCCTCCTTTATTTCCCTCTGGCCACGGCCCAATCCGGTGATGATGAACCTAGTACGCTGTCGGAAGTTAATAACGATAATTTTGAACGGGGTTACAACCCCTCAATCACCATAATCTTGGTGGTTATGGTGGCAGCTTTCTTCTTAATGGGTTTCTTCACAATCTATACCCGCCATTGCACCGATGCCCCATCCAACAACATACGAATCCAAGGTGTCGAAATTCGACCACGTAAGGTGCCACGTGGGCTTGACCGTGCTTTCATAGATACTTTTCCAATTTTAGAATATTCAGAGGTTAAGATTCACAAAATTGGAAAAGAAGCATTGGAATGTGCGATTTGTTTATGCGAGTTTGAAGACTCGGATACGTTGCGTTTAATTCCAAAATGTGATCACGTGTTCCATCCTGAATGCATTGATGAATGGCTATCTTCTCATTCCACGTGCCCGGTTTGTAGAGCCAACCTTGTTCCTCAACCCGGTGAGTCAGTTCACGCATTACCGATCCAAACCAATGTTGACTCGGTACATGACATTGAAGCACAAAACGACGTCGTATCAACAGAACATGAAAGAGTCTTATCATCAACGAATCCAGAATTAGTAATAATTCCACCTTCTAATAAAAGAACATTGAACCGGACCCGCACGCGAGACCGATGTAACCGGCCAAGAAGGTTTCCAAGGTCACACTCGACCGGGCATTCGTTGGTTCAACCTGTTGAGAACACGGAACGATTCACTTTAAGATTGCCGTTAGAAGTTAGAAAGAGAATAATAAATCGACAATTACAACGTGCTAGTAGCTTCATTTTGTTGCCGAACCGGACCGATTGTGAAGGGAGTAGTAGAGGGAGGATTTCAAAGCTATTGAACTTGAGCTTTAAACAGGACCGTTGGGTTTTCACAATGCAACCACCGTTTTTAACCAGAGCATTGTCACCGTCGCGGTTGGCAGTTAATAACACCACTGAAGGAGCCTCCAACCCCCTTACACAACAACCATCTCTTGGAACGCCACTACCGGCTATTCAATTACCCCGCCTTCCGGTTTAA 1083 0.4432 MRTTLYICFLLYFPLATAQSGDDEPSTLSEVNNDNFERGYNPSITIILVVMVAAFFLMGFFTIYTRHCTDAPSNNIRIQGVEIRPRKVPRGLDRAFIDTFPILEYSEVKIHKIGKEALECAICLCEFEDSDTLRLIPKCDHVFHPECIDEWLSSHSTCPVCRANLVPQPGESVHALPIQTNVDSVHDIEAQNDVVSTEHERVLSSTNPELVIIPPSNKRTLNRTRTRDRCNRPRRFPRSHSTGHSLVQPVENTERFTLRLPLEVRKRIINRQLQRASSFILLPNRTDCEGSSRGRISKLLNLSFKQDRWVFTMQPPFLTRALSPSRLAVNNTTEGASNPLTQQPSLGTPLPAIQLPRLPV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1477 360 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 305 - -
Lal3g1477 360 MobiDBLite consensus disorder prediction 330 349 - -
Lal3g1477 360 CDD RING-H2_EL5_like 119 162 - -
Lal3g1477 360 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lal3g1477 360 SMART ring_2 120 161 IPR001841 -
Lal3g1477 360 PANTHER RING FINGER DOMAIN-CONTAINING 5 305 - -
Lal3g1477 360 Pfam Ring finger domain 119 162 IPR001841 -
Lal3g1477 360 SUPERFAMILY RING/U-box 114 169 - -
Lal3g1477 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1477 Lal-Chr3 20662686 20663768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1477 5 339 Rapid Response to Elicitors AT3G05200 41.813 2.96e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1477 K10664 - gmx:100783823 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1477 3 20662686 20663768 Lal3g1477 3 20662686 20663768 ECH
Lal3g1477 3 20662686 20663768 Lal13g0662 13 4277895 4278827 PCT
Lal3g1477 3 20662686 20663768 Lal24g0524 24 3679273 3680154 PCT
Lal13g0662 13 4277895 4278827 Lal3g1477 3 20662686 20663768 PCT
Lal24g0524 24 3679273 3680154 Lal3g1477 3 20662686 20663768 PCT