Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1473 ATGGCCTTCACTCTCATTTCACTCCTTCTCATAACACTCTTCTTCTTCTTCTTCATATTTCCTTCCTCCCATTTTCCTTCCTCTCATTTTCCTTCCTCCCATTTTCCCTCCAATCGTAGATCACTTCTCTCAAATGGAGGAATCTTCAACTACCATTCTCTCTTCAACAACAACACTTCCCTCTCTCTCTCTTCCCTCTCTCTCTTCCTCCTCCTCCACTTCCACATCCTCATCACCACCGCCCACCGCCACTTCTCCATCGTCACCACCAAACTCGCCTCCCACCTCCGCCTCTCCCCTTCCATGGCCGCCGTCACCCTCCTATCCCTCGGCAACGGTGCCCCTGACGTCTTCTCCTCCCTCGCCGCCCTCCGCTCCGGACAGCCTCGCACCGGACTCGGTGCTATCTTATCCGCCGGCGCATTCGTCTCCGCACTCGTCGTCGGGTTCGTCGCAATCTACGCTGCTCCGTTTAGCGTCGATCCGGCGCCGTTTATTAGAGACGTGTTGTTCTATTTAACGTCGGCGTTGTTTCTGTTTTATGTTTATTTGAGTGCTGAGATATTTCTGTGGCAGGCGATTGGATTTGTAGGGTTTTATGTGTTCTTTGTTGGATTTGTGTTTTATATGGATTTAGGAATTGTAAATCAAAGAGTGAAGATTGGAAACGAGTCTGTTTCAGATCTTGAACAACAAAACGAACTCATCACTTCACATGAACAAGTGAAACGACGTAGTTCTCGATTTCGCCGACCTTTTGAATTGGTATGTTCCGAATTACCCTGTGCTGTGTTTTTATGTGATCAAGTTAGAGAATACCAAAATTGCAATATTTTGGGCTCAAATGCAGATGCAGAGACTACCGAAATTGATTTCAATGTTCGGCTGTGTGATGTTCTTATTGACAGAATTACAGTTGCATATAGAATGATTTGGTGTTTTTTTATGGTACTTGGAGCTGACATTGAACTGTCCTCAGCCAGGAACATTGAGGTTCAGATTTCTAAATTATGGGAGGTGCCTGTCTCAACTCTCTTGAAATTGACTATCCCTCAACCAGCACCATCACAATGGAGCAGATTTTATGCATCAGCCAATATCGCTCTCTGTCCACTTGCCCTCTTGTATGCCTGCAACTCGATCATGCCATTTAATCATCCCATAGTTTTCCTCCTCCCCAACACTCATTTCCCTCTATGGTCAGTAGTGCTTACAACAAGCTTCTCTCTTGCATTTCTTCATTTTATAATCGAAAAAGAACCCCCGAAAACAGAGCAACTGCCTGTGGTGGTCACGGCATTTATTATGAGTGTGTTTTGGATATCTACTACCGCTGGAGAACTGGTTAACTGTCTTGAAGCTATAGGCATCCTTCTCAAATTGCCACCAGCAATCCTCGGTCTTACGGTGCTGGCATGGGGAAATTCAGTGGGTGATCTTGTGGCTGATGTCGCAGTTGCTAAAGCTGGTCATCCAGCAATGGCAATGGCCGGATGCTTCGCTGGACCGATGTTCAACATGCTTGTTGGTCTTGGAAGTGCTTTGGTAATACAAACAGCAGATATATATCCTAGAGCTTATGAGCTTAATTTCCACGTTGGTATTGTCATTGCATTTGTATTCCTGATTTTAAGCCTTATGGGGTCTCTTTTGGTGATCACTTGGTGCAGATTCAGAGTGCCTAGGTTTTGGGGATTCTGTCTGGTAGGCCTCTATATTGCTTTTATGGCAGTTCTGGGTTTCAGAGTCTGCATAGCACAATATCATCACCAGTTTGAGAAGTGTGTAGCCGTTTGCTTGTTTGACTTCACTTGGAACAGAATGGATCATCAAGGGCATGGCCAGAACCCAAATATGGGGGTGCCATATGGTTCTAATCCTTATCAGCAAAGCCAAATGACTGGGGCACCTGGGTCAGTTGTTACGCCTGCTGGGAACATGCAATCCACTGGTCAACCTACTGGAGCTCAGCTGGGACAACACCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAACAACTTCAGCAACAGCTCCAACAATTTTGGGCAAATCAATATCAGGAGATTGAGAAGGTTACTGATTTCAAGAATCACAGCCTTCCCCTGGCAAGGATAAAAAAGATTATGAAAGCTGATGAGGATGTCCGAATGATATCAGCTGAGGCACCTGTCATATTTGCGAGGGCGTGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCCTGGAATCACACTGAGGAGAACAAGAGAAGAACCCTTCAAAAGAATGACATCGCTGCAGCTATCACAAGAACTGATATATTTGATTTCTTGGTTGACATTGTGCCACGTGAGGACTTAAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAGCAATGCCTGTTGCAGGGCCTGCTGATGCGCTTCCTTATATGTATATGCAACCTCAGCATGCACCCCAAGCCGGAGTGCCAGGTGTCATAATGGGAAAACCTGTGATGGACCCAAATATGTATGCTCAGCAGCCTCATCCCTACATGGCACCACAAATGTGGCCACGGCCACAAGACCAGCAACCATCATCTCCAGATCATTAG 2583 0.458 MAFTLISLLLITLFFFFFIFPSSHFPSSHFPSSHFPSNRRSLLSNGGIFNYHSLFNNNTSLSLSSLSLFLLLHFHILITTAHRHFSIVTTKLASHLRLSPSMAAVTLLSLGNGAPDVFSSLAALRSGQPRTGLGAILSAGAFVSALVVGFVAIYAAPFSVDPAPFIRDVLFYLTSALFLFYVYLSAEIFLWQAIGFVGFYVFFVGFVFYMDLGIVNQRVKIGNESVSDLEQQNELITSHEQVKRRSSRFRRPFELVCSELPCAVFLCDQVREYQNCNILGSNADAETTEIDFNVRLCDVLIDRITVAYRMIWCFFMVLGADIELSSARNIEVQISKLWEVPVSTLLKLTIPQPAPSQWSRFYASANIALCPLALLYACNSIMPFNHPIVFLLPNTHFPLWSVVLTTSFSLAFLHFIIEKEPPKTEQLPVVVTAFIMSVFWISTTAGELVNCLEAIGILLKLPPAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVIQTADIYPRAYELNFHVGIVIAFVFLILSLMGSLLVITWCRFRVPRFWGFCLVGLYIAFMAVLGFRVCIAQYHHQFEKCVAVCLFDFTWNRMDHQGHGQNPNMGVPYGSNPYQQSQMTGAPGSVVTPAGNMQSTGQPTGAQLGQHQLAYQHIHQQQQQQLQQQLQQFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGAMPVAGPADALPYMYMQPQHAPQAGVPGVIMGKPVMDPNMYAQQPHPYMAPQMWPRPQDQQPSSPDH 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1473 860 SUPERFAMILY Histone-fold 670 773 IPR009072 GO:0046982
Lal3g1473 860 Pfam Core histone H2A/H2B/H3/H4 662 764 IPR007125 GO:0003677
Lal3g1473 860 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 45 578 - -
Lal3g1473 860 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 45 578 - -
Lal3g1473 860 MobiDBLite consensus disorder prediction 834 860 - -
Lal3g1473 860 Pfam Sodium/calcium exchanger protein 431 578 IPR004837 GO:0016021|GO:0055085
Lal3g1473 860 Pfam Sodium/calcium exchanger protein 67 208 IPR004837 GO:0016021|GO:0055085
Lal3g1473 860 Gene3D Histone, subunit A 663 779 IPR009072 GO:0046982
Lal3g1473 860 Gene3D - 98 228 IPR044880 -
Lal3g1473 860 Gene3D - 363 582 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1473 Lal-Chr3 20633274 20640844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1473 333 578 Antiporters AT1G08960 79.675 4.31e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal3g1473 Na_Ca_ex 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1473 K13754 - pda:103709919 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1473 3 20633274 20640844 Lal3g1473 3 20633274 20640844 ECH