LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal3g1464	ATGTTTGGCTCTGTAGAGAATACTGGATATGAATATGATGGAAGTGGACTTTCAGGACCCATTATGATTCCAAAGCGTTTTGTGTGGCCTTATGGGGGAAGAAGGGTGTTTCTAAGTGGTTCTTTTACAAGATGGTCTGAACATATACCTATGTCTCCCATGGAGGGATGTCCTTCAGTATTTCAAGTTGTTTGCAGCTTGACGCCAGGATATCATCAGTTCAAATTTAATGTGGATGGTGAGTGGCGGCATGATGAGCATGAGCCATATGTAAGTGGGAACTATGGAGTAGTTAATACTATTTATTTAGTGAGAGAGCCAGATATTTCACCTACAATCTTAAGTGCTGAAACACCTGGTAGATCTCACATGGAGGTTGATAATGATGTCTTTGGGCATGTGGAAGCTAATCCAAGAATTCCAGAGTCTGATCTGGAGATCTCTCGCCACCGTATATCTACATTCTTGTCTACACATACTGCTTATGAGTTGCTCCCTGAGTCAGGGAAGGTCATTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATATTCTTTATGAACAGGGCGTCTCGATGGCTCCTCTATGGGATTTTGATAGGAGCCAGTTCGTTGGAGTGCTCAGTGCAATGGACTTTATTCTAATATTGAAAGAGTTGGGAAATCATGGCTCAAATTTGACTGAAGAACAACTCGAGACTCATGCTATATCAGCCTGGAAAGAGGGAAAATTTCAGCAACACAGAGTACTTGAAAGTAATGGGGGATCACATCCTTGGCGTTTTGTTCATGCTGGGCCCCATGAATTTCTAAAAGATGTAGCTTTGAAAGCTTTGCAGAACAAGGTTTCAACGGTTCCTATCATCCATTCTGATTCAGAGGACGGTTCTTTTCCTCAATTGCTACATCTTGCTTCCCTATCAGGAATACTAAAATGTATATGCAGGCATTTTAAGTATTCTTCTGGTTCTTTGCCGATTCTTCAACTACCGATTGGTTCAATACCCTTGGGAACATGGGTGCCTAAAGTTGGAGAACCAAATGGACAGCCACTTGCAATGCTAAGGCCAAATGCATCTCTTGGTGCTGCTTTGTCTATGTTTGTTCAAGCTAAAGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATATACTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATGCCCGAATATCTCTCGACGACATTAGTATCCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCTCCTTATGGTCTTTACAGTGGCCAGAGATGTCACATGTGTTTAAGGTCTGATTCATTGCACAAAGTGATGGAGCAGTTGGCTAAACCCGAGGTTAGAAGACTTGTGATTGTTGAAGCTGGGAGTAAGCGTGTAGAAGGGATTATTTCTTTAAGTGATGTGTTCAAATTCTTGTTTGGAATTGGCTAA	1464	0.4112	MFGSVENTGYEYDGSGLSGPIMIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPSVFQVVCSLTPGYHQFKFNVDGEWRHDEHEPYVSGNYGVVNTIYLVREPDISPTILSAETPGRSHMEVDNDVFGHVEANPRIPESDLEISRHRISTFLSTHTAYELLPESGKVIALDINLPVKQAFHILYEQGVSMAPLWDFDRSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHAISAWKEGKFQQHRVLESNGGSHPWRFVHAGPHEFLKDVALKALQNKVSTVPIIHSDSEDGSFPQLLHLASLSGILKCICRHFKYSSGSLPILQLPIGSIPLGTWVPKVGEPNGQPLAMLRPNASLGAALSMFVQAKVSSIPIVDDNDSLLDIYSRSDITALAKDKAYARISLDDISIHQALLLGQDANSPYGLYSGQRCHMCLRSDSLHKVMEQLAKPEVRRLVIVEAGSKRVEGIISLSDVFKFLFGIG	487

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal3g1464	487	CDD	E_set_AMPKbeta_like_N	26	104	-	-
Lal3g1464	487	Pfam	Glycogen recognition site of AMP-activated protein kinase	23	109	IPR032640	-
Lal3g1464	487	SUPERFAMILY	CBS-domain pair	351	484	IPR046342	-
Lal3g1464	487	PANTHER	CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED	15	485	-	-
Lal3g1464	487	ProSiteProfiles	CBS domain profile.	164	226	IPR000644	-
Lal3g1464	487	SUPERFAMILY	CBS-domain pair	150	319	IPR046342	-
Lal3g1464	487	PANTHER	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	15	485	-	-
Lal3g1464	487	Pfam	CBS domain	352	396	IPR000644	-
Lal3g1464	487	Pfam	CBS domain	437	484	IPR000644	-
Lal3g1464	487	SMART	cbs_1	170	219	IPR000644	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal3g1464	Lal-Chr3	20541213	20550934	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal3g1464	27	113	Protein tyrosine phosphatase (PTP) family	AT3G01510	34.444	9.70e-06	46.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal3g1464	-		-	gmx:100778117	817.764

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal3g1464	3	20541213	20550934	Lal3g1464	3	20541213	20550934	ECH
	Lal5g0145	5	1278447	1285102	Lal3g1464	3	20541213	20550934	LSH

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