Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1464 ATGTTTGGCTCTGTAGAGAATACTGGATATGAATATGATGGAAGTGGACTTTCAGGACCCATTATGATTCCAAAGCGTTTTGTGTGGCCTTATGGGGGAAGAAGGGTGTTTCTAAGTGGTTCTTTTACAAGATGGTCTGAACATATACCTATGTCTCCCATGGAGGGATGTCCTTCAGTATTTCAAGTTGTTTGCAGCTTGACGCCAGGATATCATCAGTTCAAATTTAATGTGGATGGTGAGTGGCGGCATGATGAGCATGAGCCATATGTAAGTGGGAACTATGGAGTAGTTAATACTATTTATTTAGTGAGAGAGCCAGATATTTCACCTACAATCTTAAGTGCTGAAACACCTGGTAGATCTCACATGGAGGTTGATAATGATGTCTTTGGGCATGTGGAAGCTAATCCAAGAATTCCAGAGTCTGATCTGGAGATCTCTCGCCACCGTATATCTACATTCTTGTCTACACATACTGCTTATGAGTTGCTCCCTGAGTCAGGGAAGGTCATTGCCTTGGATATAAATTTACCAGTTAAGCAAGCATTCCATATTCTTTATGAACAGGGCGTCTCGATGGCTCCTCTATGGGATTTTGATAGGAGCCAGTTCGTTGGAGTGCTCAGTGCAATGGACTTTATTCTAATATTGAAAGAGTTGGGAAATCATGGCTCAAATTTGACTGAAGAACAACTCGAGACTCATGCTATATCAGCCTGGAAAGAGGGAAAATTTCAGCAACACAGAGTACTTGAAAGTAATGGGGGATCACATCCTTGGCGTTTTGTTCATGCTGGGCCCCATGAATTTCTAAAAGATGTAGCTTTGAAAGCTTTGCAGAACAAGGTTTCAACGGTTCCTATCATCCATTCTGATTCAGAGGACGGTTCTTTTCCTCAATTGCTACATCTTGCTTCCCTATCAGGAATACTAAAATGTATATGCAGGCATTTTAAGTATTCTTCTGGTTCTTTGCCGATTCTTCAACTACCGATTGGTTCAATACCCTTGGGAACATGGGTGCCTAAAGTTGGAGAACCAAATGGACAGCCACTTGCAATGCTAAGGCCAAATGCATCTCTTGGTGCTGCTTTGTCTATGTTTGTTCAAGCTAAAGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATATACTCAAGAAGTGATATTACTGCATTGGCTAAAGATAAAGCTTATGCCCGAATATCTCTCGACGACATTAGTATCCATCAGGCATTGCTTTTGGGACAAGATGCAAATTCTCCTTATGGTCTTTACAGTGGCCAGAGATGTCACATGTGTTTAAGGTCTGATTCATTGCACAAAGTGATGGAGCAGTTGGCTAAACCCGAGGTTAGAAGACTTGTGATTGTTGAAGCTGGGAGTAAGCGTGTAGAAGGGATTATTTCTTTAAGTGATGTGTTCAAATTCTTGTTTGGAATTGGCTAA 1464 0.4112 MFGSVENTGYEYDGSGLSGPIMIPKRFVWPYGGRRVFLSGSFTRWSEHIPMSPMEGCPSVFQVVCSLTPGYHQFKFNVDGEWRHDEHEPYVSGNYGVVNTIYLVREPDISPTILSAETPGRSHMEVDNDVFGHVEANPRIPESDLEISRHRISTFLSTHTAYELLPESGKVIALDINLPVKQAFHILYEQGVSMAPLWDFDRSQFVGVLSAMDFILILKELGNHGSNLTEEQLETHAISAWKEGKFQQHRVLESNGGSHPWRFVHAGPHEFLKDVALKALQNKVSTVPIIHSDSEDGSFPQLLHLASLSGILKCICRHFKYSSGSLPILQLPIGSIPLGTWVPKVGEPNGQPLAMLRPNASLGAALSMFVQAKVSSIPIVDDNDSLLDIYSRSDITALAKDKAYARISLDDISIHQALLLGQDANSPYGLYSGQRCHMCLRSDSLHKVMEQLAKPEVRRLVIVEAGSKRVEGIISLSDVFKFLFGIG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1464 487 CDD E_set_AMPKbeta_like_N 26 104 - -
Lal3g1464 487 Pfam Glycogen recognition site of AMP-activated protein kinase 23 109 IPR032640 -
Lal3g1464 487 SUPERFAMILY CBS-domain pair 351 484 IPR046342 -
Lal3g1464 487 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 15 485 - -
Lal3g1464 487 ProSiteProfiles CBS domain profile. 164 226 IPR000644 -
Lal3g1464 487 SUPERFAMILY CBS-domain pair 150 319 IPR046342 -
Lal3g1464 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 15 485 - -
Lal3g1464 487 Pfam CBS domain 352 396 IPR000644 -
Lal3g1464 487 Pfam CBS domain 437 484 IPR000644 -
Lal3g1464 487 SMART cbs_1 170 219 IPR000644 -
Lal3g1464 487 SMART cbs_1 435 484 IPR000644 -
Lal3g1464 487 SMART cbs_1 352 400 IPR000644 -
Lal3g1464 487 Gene3D - 331 486 IPR046342 -
Lal3g1464 487 ProSiteProfiles CBS domain profile. 348 406 IPR000644 -
Lal3g1464 487 SUPERFAMILY E set domains 23 105 IPR014756 -
Lal3g1464 487 Gene3D Immunoglobulins 21 105 IPR013783 -
Lal3g1464 487 Gene3D - 142 323 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1464 Lal-Chr3 20541213 20550934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1464 27 113 Protein tyrosine phosphatase (PTP) family AT3G01510 34.444 9.70e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1464 - - gmx:100778117 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1464 3 20541213 20550934 Lal3g1464 3 20541213 20550934 ECH
Lal5g0145 5 1278447 1285102 Lal3g1464 3 20541213 20550934 LSH