Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1446 ATGCCTGGGGGAGATGATGCTGAGAGGAAGAAGAGACTTATCATTATTGGTATCTCAACATTCTTATTGGTGGCTATGGTAATAGGTGTTACTGTTAGTATCACATTCACTAAGAATGTTTCCATTGATGAAGAAGATCCAAAAGATAACAACAAATCCCATTTATCATCAACAGTTAAAGCTGTCAAAACCCTTTGTCATCCCACAGATTATAAGAAGGAATGTGAAGAGAGTCTCACAAAGGAAGCTGGTAATACCACTGATGCAAGAAAGCTTATTGAGATTGCATTCCAAATAACTATTAAGAGAATTGGTGAGGGACTTGAGAAAGCAAATATATTGCATGAGGTTGAGAAGGAACCTAGAGCTAAAGAGGCTCTTGTTACATGCAAGCAACTCATGGATCTATCTATTGAGGAATTCAAAAGATCAATTGAAAGATTGGGAAAGTTTGATCTCAATAACCTTGACAATATCCTCACAAGTTTGAAGGTTTGGCTTAGTGGTGCTGTTACATACCAAGAGACATGTTTGGATGCATTTGAGAACACCACTTCTGATGCTGTTTTCACCAAAATGCCTAACCTATCCTATCTTAATGAATTTGAGCTTCTTGAATTCATTAAGGTTGAATTCTTAGGAATGGGTTTGGTTTATGAAACAATAGATTCAGTTGATATTAATTTGATAAATCCAAGTCCGGAGCTTTTGCTCAGTGAAAGATTGATTTTTGTTCATCGAGATTTCCTCTTGCTGAGTGACATTAGAACAGAGAGTTTGGATTCTCTCGCTCAGCGAAAAATGAATCTCGCTCGGCGAGAACAACCATTGAGCAAAACAAAAGCGGTAGAACTGGACAATTTGACTCAGCGAGCAATGAACGAGACAAACACGCTTAACGAGAATACCAATTCGCTAAAGGAGATGAATAGTAATAAGATGAAGGAAGTATTGCAAACTGCAATGCACATGAGCAGCAATGGTCTTGCCATAATCAATGAACTTTCAAAAACTCTCACAACTTTTCATATCACAAAACCTGTTGGGCGTCGTCTCCTTCAAGATGCTGATGATTTACCAGTTCTTGGTCATGACAATGATGATGATGAGTTTCCTGAATGGGTTGAGGCTCATGTAGGTTTTCGTAGATTCCTTAAAATGAACTCAAGAAAGTTCATGTCTAATGTCATTGTTGCTAAGGATGGTAGTGGAAATTTCACTACCATCACTGATGCATTAAAGAATGTGCCTAGGAAGAACCAAAAACCATTCATTATATGGATCAAAGAGGGTGTTTACAATGAGCATGTTGAAGTTTCTAGGAATATGACTCATGTGGTGTTTGTTGGTGATGGTTCCAAAAAGACAAGGATCATTGGTAGCAAGAACTTCATTGATGGAATTAACACTTACAATACTGCTACTGTTGCTGTTCAAGGAGACTACTTTGTTGCCATTGGTGTTGGGTTTGAGAACTCAGCTGGTGCCATTAAACATCAAGCAGTTGCACTAAGAGTTCAAGCAGACAAATCCATTTTCTATAAATGCAGAATGGATGGGTTCCAAGACACACTTTATGTCCATGCCTTGCGTCAATTCTATAGGGATTGCATCATTTCAGGTACTATAGACTTTGTCTTTGGTGATGCAGTGGCTGTTTTCCAAAACTGCACTTTCGTTGTTAGAAAGCCAATGGAAAATCAACAATGCATTGTTACCGCACAAGGCAGAAAGGAGAGGTACCAACCATCAGGAATAGTGATACAAGGTGGTGCCATTGTATCAGACCCAAACTATTACCCAGTGAGGTTTGACAACAAAGCCTACTTAGCTCGTCCATGGAAGAATTTCTCAAGAACCATTTTCTTAGACACTTACATTGGTGACTTAATCCAACCAGAAGGATATATGCCATGGCAAACAGATAAAGGACTTCCAACAAATACAGAAACATGTTTCTATGCTGAGGTTAATAATCGTGGTCCTGGTTCTGACCTAGCCAAACGTGTAAAATGGCAAGGTGTTAAGAACCTTACACCACAAATAGCAACAGATTTTTATCCATCAAAGTTCTTTCATGGTGATGATTGGATTAGGGTTACTAATATTCCTTATTCCTCTGGCAAGAACTCCTCCAAGCATTGA 2145 0.3865 MPGGDDAERKKRLIIIGISTFLLVAMVIGVTVSITFTKNVSIDEEDPKDNNKSHLSSTVKAVKTLCHPTDYKKECEESLTKEAGNTTDARKLIEIAFQITIKRIGEGLEKANILHEVEKEPRAKEALVTCKQLMDLSIEEFKRSIERLGKFDLNNLDNILTSLKVWLSGAVTYQETCLDAFENTTSDAVFTKMPNLSYLNEFELLEFIKVEFLGMGLVYETIDSVDINLINPSPELLLSERLIFVHRDFLLLSDIRTESLDSLAQRKMNLARREQPLSKTKAVELDNLTQRAMNETNTLNENTNSLKEMNSNKMKEVLQTAMHMSSNGLAIINELSKTLTTFHITKPVGRRLLQDADDLPVLGHDNDDDEFPEWVEAHVGFRRFLKMNSRKFMSNVIVAKDGSGNFTTITDALKNVPRKNQKPFIIWIKEGVYNEHVEVSRNMTHVVFVGDGSKKTRIIGSKNFIDGINTYNTATVAVQGDYFVAIGVGFENSAGAIKHQAVALRVQADKSIFYKCRMDGFQDTLYVHALRQFYRDCIISGTIDFVFGDAVAVFQNCTFVVRKPMENQQCIVTAQGRKERYQPSGIVIQGGAIVSDPNYYPVRFDNKAYLARPWKNFSRTIFLDTYIGDLIQPEGYMPWQTDKGLPTNTETCFYAEVNNRGPGSDLAKRVKWQGVKNLTPQIATDFYPSKFFHGDDWIRVTNIPYSSGKNSSKH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1446 714 Pfam Plant invertase/pectin methylesterase inhibitor 61 194 IPR006501 GO:0004857
Lal3g1446 714 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 202 IPR035513 -
Lal3g1446 714 CDD PMEI-like_3 64 189 - -
Lal3g1446 714 Gene3D - 389 709 IPR012334 -
Lal3g1446 714 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 190 IPR006501 GO:0004857
Lal3g1446 714 SMART PMEI_2 57 199 IPR006501 GO:0004857
Lal3g1446 714 ProSitePatterns Pectinesterase signature 2. 539 548 IPR033131 -
Lal3g1446 714 PANTHER PECTINESTERASE 305 711 - -
Lal3g1446 714 PANTHER PECTINESTERASE 13 193 - -
Lal3g1446 714 SUPERFAMILY Pectin lyase-like 395 707 IPR011050 -
Lal3g1446 714 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 187 IPR035513 -
Lal3g1446 714 Pfam Pectinesterase 395 695 IPR000070 GO:0030599|GO:0042545
Lal3g1446 714 PANTHER PECTINESTERASE 305 711 - -
Lal3g1446 714 PANTHER PECTINESTERASE 13 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1446 Lal-Chr3 20394155 20398193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1446 259 708 Carbohydrate Esterase AT3G05610 46.018 2.09e-141 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1446 K01051 - gmx:100801686 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1446 3 20394155 20398193 Lal18g0367 18 3126745 3129366 LSH
Lal3g1446 3 20394155 20398193 Lal24g0503 24 3550215 3554426 PCT