Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1440 ATGAGTTCTTTGAGTAGAGAATTGGTGTTTCTGATTCTCCAATTTCTGGAGGAAGAGAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAAGAATCCGGGTTTTTCTTCAACATGAAATACTTTGAGGAAAAAGTTCAGGCTGGTGAATGGGATGAAGTTGAGAAGTACTTAATAGGGTTTACGAAAGTTGACGACAATAGATACTCAATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCACTTGATAGGCAAGACAGGGCATCGGCTGTGGACATATTAGTGGGCGATCTGAAAGTTTTTTCCACATTCAATGAGGAACTATATAAAGAAATCACACAGCTGTTAACACTAAATAATTTCAGAGAGAATGAGCAGCTATCCAAGTACGGTGACACCAAAACTGCACGAGGTATTATGTTGATAGAGCTAAAAAAGCTCATAGATGCAAATCCTCTCTTTCGTGATAAGCTTGTCTTCCCCACTCTCAAGTCCTCAAGATTGAGGACTTTAATCAATCAGAGTTTGAACTGGCAGCACCAACTTTGCAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTCACAGATCATTCGTGTGCACCTTCTAATGGTCCTCTAGCACCTACACCAGTGAATCTTCCTGTTGCTGCTGTTGCAAAGCCGACTACATATACTTCACTTGGACCTCATGGTCCCTTCCCACCTGCTGCAGCAACTGCTAATGCCAATGCTTTGGCTGGTTGGATGGCCAATGCTTCAGCTTCATCATCTGTGCAAGCGGCTGTTGTCACAGCATCAACCATACCAGTCCCACAGAATCAAGTGTCTATGTTGAAGCGTCCAAGAACTCCTCCACCAGCTCCTGGTATGATTGATTACCAGAATGCTGATCATGAACAGCTCATGAAAAGGCTTCGGCCTGCTCCTTCTGTAGAGGAGGTTTCATATCCTACAGCTCGACAAGTCCCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACTTTGCATCAAGGGTCCTCTGTGACAAGCATGGATTTTCATCCTTCTTACCAAACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTGCCCTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCTCCAAGCCATTCAAGATATGGGACAAGACAAACTGCTTGCCATTTCAGGCAGCTGTTGCCAAAGATGCACCTATTTCTGTCAGCCGTGTCTCATGGAGCCCTGATGGAAACTTTGTGGGTGTTGCATTTACCAAACATTTGATTCACTTATATGCCTACACTGGACCAAATGAGCTAGCCCAGCGTGTAGAGGTTGATGCCCATATTGGTGGCGTGAATGACTTGGCATTTGCTCATCCAAGTAAGCAACTCTGTATCGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGAAGGCTATTTAACTTTGAGGGGCATGACACACCTGTATATTCTATCTGTCCTCACCACAAGGAGAACATTCAGTTCATATTTTCAACTGCGATAGATGGCAAAATAAAAGCCTGGTTATATGATAACATTGGTTCTAGGGTTGACTATGATGCTCCTGGTCACTGGTGCACTACAATGCTTTATAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAATCATTTCTAGTTGAATGGAATGAAAGTGAAGGAGCAATCAAGAGAACATATAATGGGTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGACGGCCAAATCAAGTTTTGGGACATGGACAATATTAATCTTCTAACAAGCACTGATGCAGATGGTGGATTACAGGGCCTTCCACGCTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTACTACATTGGACAATGGATTCAAAATTCTTGCTAATGCTGTTGGTCTTAGATCCTTAAGAACAGTTGAAACTCCAGCATTTGAAGCATTGAGGTCACCAATTGAATCTGCTGCAGTGAAGGTATCTGGCTCTTCTGTTAATATTAGTCCTGTCAACTGTAAAGTGGAAAGGAGCTCCCCGGCCAGGCCTTCTCCAATTCTTAATGGGGTTGAACCCATGGGTCGAAATGTGGAGAAACCAAGAAATATGGAAGATGTAATAGATAGACCTAAAGCATGGCAGCTGTCTGAAATTGTGGACCCTGTCCAATGTCGGTTAGCTACCATGCCTGACAACACAGATTCTTCCAGCAAGGTTGTTCGACTTCTATATACGAATTCTGGTGCTGGTCTTTTGGCACTTGGCTCAAATGGTGTTCAGAAGCTATGGAAGTGGTCTCGCAATGAACAGAATCCCACTGGAAAGGCCACCGCTAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACAAATGATATCACGGGAGTTAACCTTGATGATGTGGTTCCTTGCATTGCACTGTCGAAGAACGATTCATATGTTATGTCTGCATGTGGCGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACGACATTCATGCCACCACCTCCTGCCTCTACCTATCTAGCTTTTCACCCTCAGGATAACAACATCATAGCCATCGGGATGGAGGATTCGACCATTCACATTTATAATGTTAGAGTAGATGAGGTGAAATCAAAATTGAGGGGCCACCAAAAGCGTATTAGTGGCTTAGCCTTTTCAACTAATCTTAACATCCTGGTTTCCTCTGGTGCTGATGCTCAACTATGTGTGTGGAGCATTGATACATGGGAGAAAAGGAAATCAGTTCCATTACAACTACCGGCTGGAAAGGCGCCTGTTGGTGACACTCGAGTGCAGTTCAATTCCGACCAAATCCGCTTGTTAGTAGCCCATGAGACTCAGTTGGCAATATACGATGCCTCGAAGATGGATCGCATTCAGCAGTGGGTTCCACAAGACGTTCTTCCTGCTCCAATATCAAATGCATGCTACTCTTGCAACAGTCGATTAATATATGCTACATTTTGTGATGGCAACACCGGGGTTTTCGATGCTGATAGCTTGAGACTAAAATGTCGTATTGCGTTGTCAACATACTTGTCACCAACAGCTTTAAATGGAAGCCAAGGTGTATATCCTGTTGTTGCTGCATCTCATCCACTAGACCCTAATCAATTTGCTGTTGGATTGAGTGATGGGTCAGTGAAAGTGATAGAACCCAATGAATCAGAGGGTAAGTGGGGAACTAATCCACCTTTGGATAATGGAATTGGTAGAACAGCATCATCATCTACAACAAGTAACCATACACCAGATCAAACTCAAAGATAA 3378 0.431 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWDEVEKYLIGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDRASAVDILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIDANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAPSNGPLAPTPVNLPVAAVAKPTTYTSLGPHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSMLKRPRTPPPAPGMIDYQNADHEQLMKRLRPAPSVEEVSYPTARQVPWSLDDLPRTVAMTLHQGSSVTSMDFHPSYQTLLLVGSNNGEIALWELGLRDRLVSKPFKIWDKTNCLPFQAAVAKDAPISVSRVSWSPDGNFVGVAFTKHLIHLYAYTGPNELAQRVEVDAHIGGVNDLAFAHPSKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHDTPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTSTDADGGLQGLPRLRFNKEGNLLAVTTLDNGFKILANAVGLRSLRTVETPAFEALRSPIESAAVKVSGSSVNISPVNCKVERSSPARPSPILNGVEPMGRNVEKPRNMEDVIDRPKAWQLSEIVDPVQCRLATMPDNTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRNEQNPTGKATASVVPQHWQPNSGLLMTNDITGVNLDDVVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLRGHQKRISGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSVPLQLPAGKAPVGDTRVQFNSDQIRLLVAHETQLAIYDASKMDRIQQWVPQDVLPAPISNACYSCNSRLIYATFCDGNTGVFDADSLRLKCRIALSTYLSPTALNGSQGVYPVVAASHPLDPNQFAVGLSDGSVKVIEPNESEGKWGTNPPLDNGIGRTASSSTTSNHTPDQTQR 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1440 1125 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 336 445 IPR011044 -
Lal3g1440 1125 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Lal3g1440 1125 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lal3g1440 1125 MobiDBLite consensus disorder prediction 703 723 - -
Lal3g1440 1125 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lal3g1440 1125 PANTHER PROTEIN, PUTATIVE-RELATED 1 1125 - -
Lal3g1440 1125 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 911 1096 IPR011044 -
Lal3g1440 1125 Gene3D - 298 534 IPR015943 GO:0005515
Lal3g1440 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 482 IPR001680 GO:0005515
Lal3g1440 1125 SMART ctlh 34 92 IPR006595 -
Lal3g1440 1125 MobiDBLite consensus disorder prediction 1104 1125 - -
Lal3g1440 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 950 IPR001680 GO:0005515
Lal3g1440 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 622 IPR001680 GO:0005515
Lal3g1440 1125 Pfam WD domain, G-beta repeat 447 481 IPR001680 GO:0005515
Lal3g1440 1125 Pfam WD domain, G-beta repeat 908 941 IPR001680 GO:0005515
Lal3g1440 1125 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 399 946 IPR011047 -
Lal3g1440 1125 MobiDBLite consensus disorder prediction 1089 1125 - -
Lal3g1440 1125 Gene3D - 535 696 IPR015943 GO:0005515
Lal3g1440 1125 Gene3D - 826 1096 IPR015943 GO:0005515
Lal3g1440 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 375 IPR001680 GO:0005515
Lal3g1440 1125 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1125 IPR027728 GO:0006355
Lal3g1440 1125 SMART Lish 4 36 IPR006594 GO:0005515
Lal3g1440 1125 SMART WD40_4 527 570 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 820 856 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 483 524 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 438 481 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 335 374 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 1047 1088 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 393 434 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 997 1033 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 859 899 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 573 613 IPR001680 GO:0005515
Lal3g1440 1125 SMART WD40_4 902 941 IPR001680 GO:0005515
Lal3g1440 1125 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1440 Lal-Chr3 20323713 20333831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1440 428 657 Miscellaneous Gene Families AT5G08390 22.128 1.49e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1440 - - gmx:100793575 2006.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1440 3 20323713 20333831 Lal3g1440 3 20323713 20333831 ECH
Lal3g1440 3 20323713 20333831 Lal18g0369 18 3146864 3157274 LSH
Lal3g1440 3 20323713 20333831 Lal12g0584 12 4170238 4183747 PCT
Lal3g1440 3 20323713 20333831 Lal24g0499 24 3510419 3531762 PCT
Lal12g0584 12 4170238 4183747 Lal3g1440 3 20323713 20333831 PCT
Lal24g0499 24 3510419 3531762 Lal3g1440 3 20323713 20333831 PCT