Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1438 ATGAAAAATGAAGTGGTTGGAGTGCATGTGGATCTTCAACAGGAACATCCAGGCCACAAGGGTAAGGAAAAGATAGAGGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAACAGCGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGACTAAGGGGACTATTAGATTGTTGCAGACACTATTTTTGCTTTGCTTGCATTATGGAGTGGGCGAAGGTGGAGTCTCTCTGCCCTTTGTGTAAGCAGCGATTCAAAACAATCAGTAAGCCTGCACGATCATTGGCAGGGTTTAATTTAAAAGAATCTGTGATTCTGGTGCCAGAACGTGATCAGGTTTATCAGCCCTGTGAAGAAGAACTCATGAGCTATATTGATCCATACGAATCTGTTATTTGTTCAGAGTGCCATGAAGGTGGAGATGATGGTCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCTCACACATACTGTGTTGGTCTGGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGATGTAGACCAGTTGCCTTGGGATCCTCAAGCACTCAAGTTCAAGAATTTGTGCCTCCAATGGTGACAACCCAAAGCCCACCTGTTAGACCATCACATGTTCATGTACCAGAAAGTATAGACCTTAACTTGATTTCTTCACCTCCTACATCGTTTCGTCAAGGATTTGGGCATGTTTCATCTTCTAGATTTTCTGGCAGAAATGTTGAAGGAGCTTCTCCTGTATCTGGAGGAGGGACTTTATCAGAGAGGCGCAGGATCCACCGTCAAATTCAGCATCTACTTTCAGTAGATAGAATGACTTCTACAACTGGCAGACTTAATGGTATTTCCGCTGGCACTTCAACCAGTAACTTGTTTAGCTCTCAAATTGATCAAAGTAGGGAAACAGCCATTCAATATACACAGACACAGGATGTGGGAACATCATACCACACATTCTTTGAGGAGAGACTATGCCACAATGCCTCTCCATTAATGCAGAATGGTGATCTCTTCTCCATGGAAATAAGCAATTCAAGAAGGTCGGTTCAGGACTCGACAACCTTGATTGACGACAGGCTCGTGAATGGGGTGCTATGGCCTGCACATGTGGAGATACCCACCATATCAGATTATGGACCAGTCCATCAGTTCAGCAGCAGATCAAACATTGTCACTGATGGTAACTTGTCCTCTGCTATCAAAGGAGAGAGTAACTTCCCCCCAGTCAAGGAGCAGCTGCAGTCAATGGTTAAAAGCCACCTGAAGAGCTTTTCTCGAGATGTTGATTTAGGGTATAGTACTTTCAAGGAGATTGCCAGAAGTTCTACACACACCATACTAGCAGCTTGTGGTCTTGAGCACAACAAGACTGAGGTTTGCACTGTGCCCCCACACACCATTCATTCAGATTTTTTGAAGAGTCGTGATCATTAA 1467 0.4404 MKNEVVGVHVDLQQEHPGHKGKEKIEEPQGRKGKEKVEDLNSEVGKQVCGICLSEENKRRLRGLLDCCRHYFCFACIMEWAKVESLCPLCKQRFKTISKPARSLAGFNLKESVILVPERDQVYQPCEEELMSYIDPYESVICSECHEGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSTQVQEFVPPMVTTQSPPVRPSHVHVPESIDLNLISSPPTSFRQGFGHVSSSRFSGRNVEGASPVSGGGTLSERRRIHRQIQHLLSVDRMTSTTGRLNGISAGTSTSNLFSSQIDQSRETAIQYTQTQDVGTSYHTFFEERLCHNASPLMQNGDLFSMEISNSRRSVQDSTTLIDDRLVNGVLWPAHVEIPTISDYGPVHQFSSRSNIVTDGNLSSAIKGESNFPPVKEQLQSMVKSHLKSFSRDVDLGYSTFKEIARSSTHTILAACGLEHNKTEVCTVPPHTIHSDFLKSRDH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1438 488 PANTHER F18C1.6 PROTEIN 22 475 - -
Lal3g1438 488 SMART ring_2 49 90 IPR001841 -
Lal3g1438 488 ProSiteProfiles Zinc finger PHD-type profile. 139 188 IPR019787 -
Lal3g1438 488 MobiDBLite consensus disorder prediction 246 267 - -
Lal3g1438 488 MobiDBLite consensus disorder prediction 1 38 - -
Lal3g1438 488 ProSitePatterns Zinc finger RING-type signature. 68 77 IPR017907 -
Lal3g1438 488 CDD RING-HC_Topors 49 91 - -
Lal3g1438 488 SUPERFAMILY RING/U-box 48 97 - -
Lal3g1438 488 SUPERFAMILY FYVE/PHD zinc finger 120 187 IPR011011 -
Lal3g1438 488 Pfam PHD-finger 141 187 IPR019787 -
Lal3g1438 488 SMART PHD_3 141 186 IPR001965 -
Lal3g1438 488 MobiDBLite consensus disorder prediction 13 38 - -
Lal3g1438 488 Pfam Ring finger domain 48 91 IPR001841 -
Lal3g1438 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Lal3g1438 488 ProSiteProfiles Zinc finger RING-type profile. 49 91 IPR001841 -
Lal3g1438 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 111 IPR013083 -
Lal3g1438 488 PANTHER F18C1.6 PROTEIN 22 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1438 Lal-Chr3 20301311 20305297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1438 136 185 C2H2 Transcription Factor Family AT3G01460 46.154 1.39e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal3g1438 PHD 1.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1438 - - mtr:MTR_7g112410 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1438 3 20301311 20305297 Lal3g1438 3 20301311 20305297 ECH