Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1419 ATGCAAATGGGAAGACACTCTTGCTGCTACAGGCAGAAGCTTCGCAAAGGTCTCTGGTCACCAGAGGAAGATGAGAAGCTTTTGAATTTCATCACCAAGAATGGCCATGGATGTTGGAGTTCAGTTCCCAAACTAGCTGGTTTGTTGAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTACCTTAGACCTGATTTGAAGAGAGGAGCATTTTCACATAAGGAAGAGAATCTAATAATTGAACTACATGCAGTCCTTGGCAACAGGTGGTCTCAAATTGCAGCACAGTTACCAGGAAGAACCGACAATGAGATAAAAAATCTTTGGAATTCAAGGCTCAAGAAGAAGCTTAAGCAAAATGGCATTGACCCCAACACTCACCAACCCCTACTTGAAGTTGAGTATGATAAGGCACCCTCACCAAACAGCAAAAGCACCAACCACAAACTATTCCTACATAATAATAGATATGATATCAATACTCATAACAACTCCATCATTAGTTGCAAACCTTATGATATAGTAGAAGAATCTTTTTACTCTTTATATGAACCAAACTTGAACCTCATCACTACTTCAAATCACAACACCTCTCTTTGTTTCATGCCAAATAACACTTCTTCTCATATGATATCAGACCTAAACTACACCAATAATAATGCTTCTTTTATATCCTTTGGTGACATTGATGGGATTCAAAACTGGGAATTAATTAACAGCATTGGAAGCATTAATAGCTGCAGCATTCAATTACAAACCAACACTGATTTTCTTAACACTACGTGGGGTCTAGCAGAGTCTGCAACTGCAAAAGCTGATGATAAATTGTGTGAGTATTTCAACACAACACTGTTTTCTGTGGGAAATAGTAACACAGTGCAGGATCAAATTCAAACCTACCTCTACAGTGATGAGGTTATTAAACCAGAACCAGGATTCATAATAGATGAGGCAAGTACTTTTTGGAACAACAACTATATCATGCAGCTAAGGTTTTAA 1002 0.3842 MQMGRHSCCYRQKLRKGLWSPEEDEKLLNFITKNGHGCWSSVPKLAGLLRCGKSCRLRWMNYLRPDLKRGAFSHKEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSRLKKKLKQNGIDPNTHQPLLEVEYDKAPSPNSKSTNHKLFLHNNRYDINTHNNSIISCKPYDIVEESFYSLYEPNLNLITTSNHNTSLCFMPNNTSSHMISDLNYTNNNASFISFGDIDGIQNWELINSIGSINSCSIQLQTNTDFLNTTWGLAESATAKADDKLCEYFNTTLFSVGNSNTVQDQIQTYLYSDEVIKPEPGFIIDEASTFWNNNYIMQLRF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1419 333 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lal3g1419 333 PANTHER MYB DOMAIN PROTEIN 55 158 220 - -
Lal3g1419 333 PANTHER MYB DOMAIN PROTEIN 55 221 328 - -
Lal3g1419 333 PANTHER MYB DOMAIN PROTEIN 55 3 153 - -
Lal3g1419 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lal3g1419 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lal3g1419 333 PANTHER HOMEODOMAIN-RELATED 3 153 - -
Lal3g1419 333 PANTHER HOMEODOMAIN-RELATED 158 220 - -
Lal3g1419 333 PANTHER HOMEODOMAIN-RELATED 221 328 - -
Lal3g1419 333 Gene3D - 70 139 - -
Lal3g1419 333 Gene3D - 13 69 - -
Lal3g1419 333 CDD SANT 71 114 IPR001005 -
Lal3g1419 333 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lal3g1419 333 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Lal3g1419 333 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lal3g1419 333 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lal3g1419 333 CDD SANT 19 63 IPR001005 -
Lal3g1419 333 SMART sant 15 65 IPR001005 -
Lal3g1419 333 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1419 Lal-Chr3 20090912 20092796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1419 3 303 MYB Transcription Factor Family AT1G09540 47.633 1.31e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g1419 Myb_DNA-binding 7.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1419 K09422 - gmx:100788976 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0462 24 3261604 3263584 Lal3g1419 3 20090912 20092796 ECH
Lal12g0547 12 3916110 3918394 Lal3g1419 3 20090912 20092796 ECH
Lal13g0566 13 3700200 3702576 Lal3g1419 3 20090912 20092796 ECH
Lal3g1419 3 20090912 20092796 Lal12g0555 12 3975096 3977088 ECH
Lal3g1419 3 20090912 20092796 Lal13g0583 13 3805334 3807497 ECH
Lal3g1419 3 20090912 20092796 Lal24g0462 24 3261604 3263584 ECH
Lal3g1419 3 20090912 20092796 Lal3g1419 3 20090912 20092796 ECH
Lal3g1419 3 20090912 20092796 Lal12g0555 12 3975096 3977088 PCT
Lal3g1419 3 20090912 20092796 Lal13g0583 13 3805334 3807497 PCT
Lal3g1419 3 20090912 20092796 Lal24g0462 24 3261604 3263584 PCT
Lal12g0555 12 3975096 3977088 Lal3g1419 3 20090912 20092796 PCT
Lal13g0583 13 3805334 3807497 Lal3g1419 3 20090912 20092796 PCT
Lal24g0462 24 3261604 3263584 Lal3g1419 3 20090912 20092796 PCT