Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1418 ATGGCTTCAATCATTGCTGTTTCTTCCATATATCTTCATCTCTACAACAAACCAACAACAACTTGTACTTCCATTTCATTACACACTAACTCTCACTTTAACAAAACACTTACCTTTCTTCCTTCTGCCATTGCTTCTTCTTCTTCTTCCTCTTCTCTTCTCAGTGAAGAAGCTTTCAAAGGGATACTCCAAAATAATGACTTTGAAAACAATGACATGTCTTATGATGATAACGTTGAAAATGATGAACTTGATATTTCAAAGCTTCCTTTGCCTTCTCGCCTTGTGGAATCCCTTTATAAACGTGGGATTACTCATCTTTTCCCCATTCAGAGAGCTGTGTTAATACCTGCACTAGAAGGAAAAGATATCATTGCTCGGGCGAAGACTGGAACAGGGAAGACATTAGCATTCGGGATTCCGATTATTAAAGGCATTACTGAAGATGAACATGGTATCCCTCATAGCCGATCTAGTCGTCTTCCTAGAGCATTAGTCCTTGCACCTACAAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATCAAAGAATCCGCGCCTTATCTAAACACAGTTTGCGTTTATGGAGGCGTTTCTTATGGTATTCAACAAGGCGCGCTTTCACGTGGTGTTGATGTAGTGGTTGGTACACCTGGTAGAATAATTGACCTGATAAACGGTAACACCCTTAAACTGAGCAAAGTTCAGTATTTAGTCCTCGACGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAAAAGCTACCATCGGAGAGGCAGAGCATGCTTTTTTCCGCAACAATGCCAGCGTGGGTGAAGAAATTGGCTAGAAAATATTTGGATAAACCATTGACAATTGATTTGGTTGGTGATGATGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATTAGCCACCGGCTCATCAAAACGAACAATTCTTTCTGATCTTATAACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCGGACGAAAAAAGACGCTGATGAAGTATCATTGTCATTAACAAATAGTATAACTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTAAATGGTTTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACCGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATAATCCATTATGAGCTTCCCAATGATTCCGAGACATTCGTGCATCGCTCTGGTCGTACCGGGCGTGCAGGAAAAGAAGGTAATGCCATACTGTTGTATACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCATGATGTAAGCTGCAAATTTGAGTTTGTTAGTCCACCAGCTATGGAAGAGATTTTGGAGTCGTCGGCTAAGCATGTTGTTACCGCACTTAATGGAGTTCATCCCGAGTCTGTTGCGTTTTTCACCCCAACTGCTGAAAGACTGATTGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTAGCAGAACTGAGTGGATTCTCTCGACCTCCATCATCTCGGTCTCTTATCACCCACAAGCAGGTATACTGTTACCTCAATTGCAAGATGATGGGCCTCGAAGTGCCTCCTATGGGAGGTTTTCTGACAGAGATCGAAGTAGCCGAAGAGGTTATAGGGATCAAAGAGGTTTTAAAACCTCACGGGGATGGGGCGGGAGCGGTGGCCGTGGCCGAGGCTCTGAAAATGATTTTGGTGATCCATTTAGGAAAGGTGGTAGAAGTAATAGACCCGGCGGCAGCAGCCGGTCTCGGACAGGAAAAAGCAGTGAGGATGGTTGGCTACTTGGTGGAGGGAGACAATCAAGCAGGTCTTCATCATCAGACAGAGGTAGCTTTGGAGGGTCTTGTTTCAATTGTGGAGGATCTGGACATAGAGCATCAGATTGTCCAAGCAATGGAGGCTTTTTTTAGTTTCGACATCTACGATTTTCGGCACTGCCTTCTCCGAAGACTCGAGCTACTGCCACTGTTGTTGGCCTAA 2043 0.4351 MASIIAVSSIYLHLYNKPTTTCTSISLHTNSHFNKTLTFLPSAIASSSSSSSLLSEEAFKGILQNNDFENNDMSYDDNVENDELDISKLPLPSRLVESLYKRGITHLFPIQRAVLIPALEGKDIIARAKTGTGKTLAFGIPIIKGITEDEHGIPHSRSSRLPRALVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYGIQQGALSRGVDVVVGTPGRIIDLINGNTLKLSKVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDKPLTIDLVGDDEEKLAEGIKLYAILATGSSKRTILSDLITVYAKGGKTIVFTRTKKDADEVSLSLTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDSETFVHRSGRTGRAGKEGNAILLYTSSQRRTVRSLEHDVSCKFEFVSPPAMEEILESSAKHVVTALNGVHPESVAFFTPTAERLIEEQGTSALAAALAELSGFSRPPSSRSLITHKQVYCYLNCKMMGLEVPPMGGFLTEIEVAEEVIGIKEVLKPHGDGAGAVAVAEALKMILVIHLGKVVEVIDPAAAAGLGQEKAVRMVGYLVEGDNQAGLHHQTEVALEGLVSIVEDLDIEHQIVQAMEAFFSFDIYDFRHCLLRRLELLPLLLA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1418 680 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 292 IPR014001 -
Lal3g1418 680 Gene3D - 85 296 IPR027417 -
Lal3g1418 680 CDD SF2_C_DEAD 306 435 - -
Lal3g1418 680 Pfam DEAD/DEAH box helicase 108 281 IPR011545 GO:0003676|GO:0005524
Lal3g1418 680 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 42 533 - -
Lal3g1418 680 Gene3D - 314 494 IPR027417 -
Lal3g1418 680 Pfam Helicase conserved C-terminal domain 318 426 IPR001650 -
Lal3g1418 680 SMART ultradead3 103 309 IPR014001 -
Lal3g1418 680 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 466 IPR001650 -
Lal3g1418 680 PANTHER - 42 533 - -
Lal3g1418 680 SMART helicmild6 346 426 IPR001650 -
Lal3g1418 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 446 IPR027417 -
Lal3g1418 680 CDD DEADc 95 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1418 Lal-Chr3 20081257 20085658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1418 95 455 Eukaryotic Initiation Factors Gene Family AT3G19760 35.519 2.57e-65 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1418 - - lja:Lj0g3v0055059.1 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0456 24 3215035 3220683 Lal3g1418 3 20081257 20085658 ECH
Lal3g1418 3 20081257 20085658 Lal3g1418 3 20081257 20085658 ECH
Lal3g1418 3 20081257 20085658 Lal13g0573 13 3740689 3745866 PCT
Lal3g1418 3 20081257 20085658 Lal24g0456 24 3215035 3220683 PCT
Lal13g0573 13 3740689 3745866 Lal3g1418 3 20081257 20085658 PCT
Lal24g0456 24 3215035 3220683 Lal3g1418 3 20081257 20085658 PCT