Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1415 ATGGCGTGTTCATTCTCAACACAGTTGCTTCACTGTCAGAACCCACTTCCTCATCTCCAGGGTAATAGTAGCCGAGTTAGATCTCATACGGTATGTTGCAGTACCAGATTATCACAGTTTGGTTATAGTAAGGGATTGGCATCAATATCACATAATGTATTAAGGCTTTCTGCTACACAACAATCTATAGCGAAGTCAACCAAATATAGGAGAATGACATGTGTCAATGCTACGGACAATGTTGTAGAGCTGCAAGCGAAAGTGACAACCAAGTGTTTCTTCGATGTAGAAGTTGGTGGTGAACTTGTGGGCAGGGTTGTCTTGGGTCTGTTTGGTGAGGTCGTTCCTAAGACGGTTGAGAATTTCCGAGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAAGGAGGGGACTTTACTGAAGGAAATGGGACTGGTGGCACAAGTATCTATGGTGCTCGTTTTAAAGACGAGAGTTTTGCGTTGAAGCATATTGGTCCCGGAGTTTTGAGCATGGCTAATGCCGGTCCTAATACCAATAGCAGTCAATTTTTCATTTCCACTGTAAAGACTCCATGGCTAGACAATCGCCATGTTGTGTTTGGACATGTCATCGATGGTCTGGATGTTGTGAAGACTCTTGAATCCCAGGAGACAAGCCGGTTAGATATCCCTCGGAAGCCTTGCAGAATTGTCAATTGTGGAGAATTGGCTAACGATGATTGA 753 0.4329 MACSFSTQLLHCQNPLPHLQGNSSRVRSHTVCCSTRLSQFGYSKGLASISHNVLRLSATQQSIAKSTKYRRMTCVNATDNVVELQAKVTTKCFFDVEVGGELVGRVVLGLFGEVVPKTVENFREKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGTSIYGARFKDESFALKHIGPGVLSMANAGPNTNSSQFFISTVKTPWLDNRHVVFGHVIDGLDVVKTLESQETSRLDIPRKPCRIVNCGELANDD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1415 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 204 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 220 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 93 245 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 94 244 IPR002130 GO:0000413|GO:0003755
Lal3g1415 250 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 47 249 - -
Lal3g1415 250 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 129 146 IPR020892 GO:0003755|GO:0006457
Lal3g1415 250 Gene3D - 76 250 IPR029000 -
Lal3g1415 250 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 47 249 - -
Lal3g1415 250 SUPERFAMILY Cyclophilin-like 84 246 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1415 Lal-Chr3 20054322 20057509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1415 104 248 U-box Gene Family AT5G67530 42.953 2.24e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1415 K03768 - gmx:100785805 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1415 3 20054322 20057509 Lal3g1415 3 20054322 20057509 ECH