Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1411 ATGGGAAGACACTCTTGCTGTTATAAGCAGAAGCTAAGGAAGGGTCTATGGTCACCAGAAGAAGATGAAAAACTTCTTAGCCATATCACAAAACATGGTCATGGATGTTGGAGTTCTGTTCCTAAGCAAGCTGGTTTGGAGAGGTGTGGTAAAAGCTGCAGATTAAGGTGGATTAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTTTCACAACAAGAAGAAAATCTCATCATTGAACTTCATGCAATGTTAGGGAATAGATGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACCGATAATGAAATAAAGAATCTGTGGAATTCTTCGTTAAAGAAGAAACTAAGACAAAAAGGTATAGACCTTATCACTCATAAACCACTTTCTGAGGTTGAGAATGTAGAGAACAAAATAAGGGAGCAAAAGAAAGTAGCAGAAGAGTTATCTAATGAATTGAACCTCATGAATTCAGAAAGTTCCAAATCAGATGGAGCTTCTTCAATTGCAACAAAAGCCTATGCAATTGAGATTGAAGGTTATAGTAGCTCCAAGATTATGATGACAAATTGTTCAAGTAAAGATTTTTTCCTAGACAAGTTTATGTCATCAAATCATGAGAACTATACAAATACTTGCCAACCCTTAGATTTGATGGGAAATTACCCTTTTCATATGGGTTATGCATCATCATATGTAAACCATTCCCGAGACAACGAGGTAGGCGATGTGAGACTTACTTCCCAACATAGCCAAAGTGGAAAACTCGATATTAACTCAGAATTTACTTCAAATTCCATCAATGTTATGTCTATTATTCCACCTACAACAACCACCTCATTTATCCCAACTTCTTTTCCCTACAAGCCATCTCTTCATGTCCCCTCAGACGATATATCGATATCGACGCCTTCTTTCGCTGCGGCCGGATCGTATTATTGGGAAGCTAGTACCTCTAACAACAGCAAAAGCAGCATTAAAACTAATGGAAGCAAAGAGTTGACAAGTAACAACACCTTCATGGAAAGCCAAGTAGAAGAAGCCAAATGGTATGAGTATTTTCACAGTCCAATGTTAATGCTACCTTCTGTGCAAAATCAAAGTTCTGAATCTTTATGCGGTGAGATAAAGCCTGCAACACATTTGGTACCTGATACTTTAGGTGCTATGTTACCTCATTCAACAAAGCAGCAACAACAACCATCCCAAAATATTAATATCTTTTCCAAGGATATGCACAAGTTAACATCAGCATTTGGACATATAGAGTAG 1272 0.3774 MGRHSCCYKQKLRKGLWSPEEDEKLLSHITKHGHGCWSSVPKQAGLERCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAMLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQKGIDLITHKPLSEVENVENKIREQKKVAEELSNELNLMNSESSKSDGASSIATKAYAIEIEGYSSSKIMMTNCSSKDFFLDKFMSSNHENYTNTCQPLDLMGNYPFHMGYASSYVNHSRDNEVGDVRLTSQHSQSGKLDINSEFTSNSINVMSIIPPTTTTSFIPTSFPYKPSLHVPSDDISISTPSFAAAGSYYWEASTSNNSKSSIKTNGSKELTSNNTFMESQVEEAKWYEYFHSPMLMLPSVQNQSSESLCGEIKPATHLVPDTLGAMLPHSTKQQQQPSQNINIFSKDMHKLTSAFGHIE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1411 423 Gene3D - 69 148 - -
Lal3g1411 423 PANTHER HOMEODOMAIN-RELATED 1 416 - -
Lal3g1411 423 CDD SANT 69 112 IPR001005 -
Lal3g1411 423 PANTHER MYB DOMAIN PROTEIN 55 1 416 - -
Lal3g1411 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal3g1411 423 Gene3D - 11 67 - -
Lal3g1411 423 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal3g1411 423 SMART sant 13 63 IPR001005 -
Lal3g1411 423 SMART sant 66 114 IPR001005 -
Lal3g1411 423 CDD SANT 17 61 IPR001005 -
Lal3g1411 423 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal3g1411 423 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal3g1411 423 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lal3g1411 423 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lal3g1411 423 Coils Coil 129 159 - -
Lal3g1411 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1411 Lal-Chr3 20033858 20035866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1411 1 421 MYB Transcription Factor Family AT1G09540 41.458 1.27e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal3g1411 Myb_DNA-binding 2e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1411 3 20033858 20035866 Lal12g0547 12 3916110 3918394 PCT
Lal3g1411 3 20033858 20035866 Lal13g0566 13 3700200 3702576 PCT
Lal12g0547 12 3916110 3918394 Lal3g1411 3 20033858 20035866 PCT
Lal13g0566 13 3700200 3702576 Lal3g1411 3 20033858 20035866 PCT